Rsrc
J-GLOBAL ID:202010002487329782   Research Resource code:NBDC02006 Update date:Mar. 29, 2019

HGTree: HGTree

HGTree: HGTree
Owning Organization:
  • Comsats Institute of Information Technology (CIIT)
  • Seoul National University
Resource classification: Database
Species (2): Archaea (NCBI Taxonomy ID: 2157) ,  Bacteria (NCBI Taxonomy ID: 2)
Overview:
The HGTree database provides putative genome-wide horizontal gene transfer (HGT) information for 2,472 completely sequenced prokaryotic genomes. HGT detection is based on an explicit evolutionary model of tree reconstruction and relies on evaluating the conflicts between phylogenetic tree of each orthologous gene set and corresponding 16S rRNA species tree. The database provides quick and easy access to HGT-related genes in hundreds of prokaryotic genomes and provides functionalities to detect HGT in user-customized datasets and gene and genome sequences. The database is freely available and can be easily scaled and updated to keep pace with the rapid rise in genomic information.
Source: FAIRsharing
Record maintainer: See the corresponding part in the FAIRsharing record
Record license: Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license

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