Rsrc
J-GLOBAL ID:202010003891792824   Research Resource code:NBDC02129 Update date:Jul. 09, 2020

MODOMICS

MODOMICS
Owning Organization:
  • Bujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB)
Resource classification: Database
Tag (subject)  (2): RNA ,  Protein
Tag (data type)  (4): Sequence ,  Chemical structure ,  Distribution ,  Interaction/Pathway
Species (41): Aquifex aeolicus (NCBI Taxonomy ID: 63363) ,  Arabidopsis thaliana (NCBI Taxonomy ID: 3702) ,  Archaeoglobus fulgidus (NCBI Taxonomy ID: 2234) ,  Bacillus subtilis (NCBI Taxonomy ID: 1423) ,  Chlorobium tepidum (NCBI Taxonomy ID: 1097) ,  Clostridium thermocellum (NCBI Taxonomy ID: 1515) ,  Enterococcus faecium (NCBI Taxonomy ID: 1352) ,  Escherichia coli (NCBI Taxonomy ID: 562) ,  Geobacillus kaustophilus (NCBI Taxonomy ID: 1462) ,  Geobacter sulfurreducens (NCBI Taxonomy ID: 35554) ,  Giardia (NCBI Taxonomy ID: 5740) ,  Haemophilus influenzae (NCBI Taxonomy ID: 727) ,  Haloferax volcanii (NCBI Taxonomy ID: 2246) ,  Homo sapiens (NCBI Taxonomy ID: 9606) ,  Methanocaldococcus jannaschii (NCBI Taxonomy ID: 2190) ,  Methanopyrus kandleri (NCBI Taxonomy ID: 2320) ,  Micromonospora zionensis (NCBI Taxonomy ID: 1879) ,  Mus musculus (NCBI Taxonomy ID: 10090) ,  Mycobacterium tuberculosis (NCBI Taxonomy ID: 1773) ,  Mycoplasma capricolum (NCBI Taxonomy ID: 2095) ,  Nostoc (NCBI Taxonomy ID: 1177) ,  Pyrococcus abyssi (NCBI Taxonomy ID: 29292) ,  Pyrococcus furiosus (NCBI Taxonomy ID: 2261) ,  Pyrococcus horikoshii (NCBI Taxonomy ID: 53953) ,  Saccharomyces cerevisiae (NCBI Taxonomy ID: 4932) ,  Salmonella typhimurium (NCBI Taxonomy ID: 90371) ,  Schizosaccharomyces pombe (NCBI Taxonomy ID: 4896) ,  Staphylococcus sciuri (NCBI Taxonomy ID: 1296) ,  Streptococcus pneumoniae (NCBI Taxonomy ID: 1313) ,  Streptomyces actuosus (NCBI Taxonomy ID: 1885) ,  Streptomyces cyaneus (NCBI Taxonomy ID: 1904) ,  Streptomyces fradiae (NCBI Taxonomy ID: 1906) ,  Streptomyces sp. DSM 40477 (NCBI Taxonomy ID: 1933) ,  Streptomyces viridochromogenes (NCBI Taxonomy ID: 1938) ,  Sulfolobus acidocaldarius (NCBI Taxonomy ID: 2285) ,  Sulfolobus solfataricus (NCBI Taxonomy ID: 2287) ,  Thermotoga maritima (NCBI Taxonomy ID: 2336) ,  Thermus thermophilus (NCBI Taxonomy ID: 274) ,  Trypanosoma brucei (NCBI Taxonomy ID: 5691) ,  Yersinia pestis (NCBI Taxonomy ID: 632) ,  Zymomonas mobilis (NCBI Taxonomy ID: 542)
Overview:
MODOMICS is the first comprehensive database system for biology of RNA modification. It integrates information about the chemical structure of modified nucleosides, their localization in RNA sequences, pathways of their biosynthesis and enzymes that carry out the respective reactions (together with their protein cofactors). Also included are the protein sequences, the structure data (if available), selected references from scientific literature, and links to other databases allowing to obtain comprehensive information about individual modified residues and proteins involved in their biosynthesis.
Source: FAIRsharing
Record maintainer: See the corresponding part in the FAIRsharing record
Record license: Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license

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