J-GLOBAL ID:202010004324216665   Research Resource code:NBDC02000 Update date:Jul. 09, 2020

short Open Reading Frame database:

short Open Reading Frame database:
Owning Organization:
  • BIOBIX (Lab of bioinformatics and computational genomics)
Resource classification: Data,Database
Tag (subject)  (2): Genome/Gene ,  RNA
Tag (data type)  (2): Sequence ,  Repository
Overview: is a database for sORFs identified using ribosome profiling. Starting from ribosome profiling, identifies sORFs, incorporates state-of-the-art tools and metrics and stores results in a public database. Two query interfaces are provided, a default one enabling quick lookup of sORFs and a BioMart interface providing advanced query and export possibilities. At present, harbors 263 354 sORFs that demonstrate ribosome occupancy, originating from three different cell lines: HCT116 (human), E14_mESC (mouse) and S2 (fruit fly).
Source: FAIRsharing
Record maintainer: See the corresponding part in the FAIRsharing record
Record license: Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license

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