Rsrc
J-GLOBAL ID:202010009710220261   Research Resource code:NBDC02516 Update date:Apr. 14, 2020

PopHumanScan

PopHumanScan
Owning Organization:
  • Institut de Biotecnologia i de Biomedicina, Universitat Autònoma de Barcelona
Resource classification: Database
Tag (subject)  (3): Genome/Gene ,  Genetic variation ,  Organism
Tag (data type)  (3): Sequence ,  Environment ,  Distribution
Species (1): Homo sapiens (NCBI Taxonomy ID: 9606)
Overview:
PopHumanScan is a catalog about thousands of regions of the human genome showing evidences of selection along the human lineage. This database retrieved the population genomic data from PopHuman, which represents the most complete pipeline for population genomics analysis of the 1000 genome project data. To detect local adaptation, many methods and statistics were applied, which were selection tests based on the allele frequency spectrum and the levels of variability (Tajima’s D, Fu and Li’s D and F, Fay and Wu’s H); selection tests based on comparisons of polymorphism and divergence and its derived estimators (MKT, α); selection tests based on the linkage disequilibrium (iHS and XP-EHH) and selection tests based on population differentiation (FST).
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

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