Rsrc
J-GLOBAL ID:202010009832804906   Research Resource code:NBDC02058 Update date:Mar. 28, 2019

MAPPER-2: mapperdb

MAPPER-2: mapperdb
Owning Organization:
  • University of Florida
Resource classification: Database
Tag (subject)  (2): Genome/Gene ,  Protein
Tag (data type)  (1): Interaction/Pathway
Species (3): Drosophila melanogaster (NCBI Taxonomy ID: 7227) ,  Homo sapiens (NCBI Taxonomy ID: 9606) ,  Mus musculus (NCBI Taxonomy ID: 10090)
Overview:
This resource provides information primarily on the upstream non-coding sequence data of genes in 3 genomes which gives insight into the transcription factors binding sites (TFBSs). For each transcript, the region scanned extends from 10,000bp upstream of the transcript start to 50bp downstream of the coding sequence start. Therefore, the database contains putative binding sites in the gene promoter and in the initial introns and non-coding exons.
Information displayed for each putative binding site includes the transcription factor name, its position (absolute on the chromosome, or relative to the gene), the score of the prediction, and the region of the gene the site belongs to. If the selected gene has homologs in any of the other two organisms, the program optionally displays the putative TFBSs in the homologs.
Source: FAIRsharing
Record maintainer: See the corresponding part in the FAIRsharing record
Record license: Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license

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