Rsrc
J-GLOBAL ID:202010010396110993   Research Resource code:NBDC02030 Update date:Mar. 29, 2019

Genetic and Genomic Information System: GnpIS

Genetic and Genomic Information System: GnpIS
Owning Organization:
  • ELIXIR-Hub, UK
  • URGI
  • transplant
Resource classification: Database
Tag (subject)  (3): DNA ,  Genome/Gene ,  Genetic variation
Tag (data type)  (4): Sequence ,  Expression ,  Phenotype ,  Method
Species (20): Agaricus subrefescens (NCBI Taxonomy ID: 87252) ,  Arabidopsis thaliana (NCBI Taxonomy ID: 3702) ,  Arabis alpina (NCBI Taxonomy ID: 50452) ,  Botrytis cinerea B0510 (NCBI Taxonomy ID: 332648) ,  Botrytis cinerea T4 (NCBI Taxonomy ID: 999810) ,  Leptosphaeria (NCBI Taxonomy ID: 5021) ,  Malus x domestica (NCBI Taxonomy ID: 3750) ,  Medicago truncatula (NCBI Taxonomy ID: 3880) ,  Microbotryum violaceum (NCBI Taxonomy ID: 5272) ,  Oryza (NCBI Taxonomy ID: 4527) ,  Pisum sativum L. (NCBI Taxonomy ID: 3888) ,  Viridiplantae (NCBI Taxonomy ID: 33090) ,  Populus trichocarpa (NCBI Taxonomy ID: 3694) ,  Sclerotinia sclerotiorum (NCBI Taxonomy ID: 5180) ,  Solanum lycopersicum (ITAG 2.3) (NCBI Taxonomy ID: 4081) ,  Triticum aestivum (NCBI Taxonomy ID: 4565) ,  Tuber melanosporum (NCBI Taxonomy ID: 39416) ,  Venturia inaequalis (NCBI Taxonomy ID: 5025) ,  Vitis vinifera (NCBI Taxonomy ID: 29760) ,  Zea mays (NCBI Taxonomy ID: 4577)
Overview:
GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps, quantitative trait loci, association genetics, markers, polymorphisms, germplasms, phenotypes and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. GnpIS is used by both large international projects and plant science departments at the French National Institute for Agricultural Research. It is regularly improved and released several times per year.

GnpIS is accessible through a web portal and allows to browse different types of data either independently through dedicated interfaces or simultaneously using a quick search ('google like search') or advanced search (Biomart, Galaxy, Intermine) tools.
Source: FAIRsharing
Record maintainer: See the corresponding part in the FAIRsharing record
Record license: Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license

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