J-GLOBAL ID:202010012966473982   Research Resource code:NBDC02118 Update date:Jul. 09, 2020

Whole-Cell Knowledge Base: WholeCellKB

Whole-Cell Knowledge Base: WholeCellKB
Owning Organization:
  • Karr Lab, Institute for Multiscale Biology & Genomics
Resource classification: Database
Tag (subject)  (5): Genome/Gene ,  RNA ,  Cell/Organelle ,  Organism ,  Health/Disease
Tag (data type)  (3): Sequence ,  Expression ,  Interaction/Pathway
Species (1): Mycoplasma genitalium (NCBI Taxonomy ID: 2097)
WholeCellKB is a collection of open-access model organism databases specifically designed to enable whole-cell models. Currently, WholeCellKB contains a database of Mycoplasma genitalium, a Gram-positive bacterium and common human pathogen. The M. genitalium database is the most comprehensive description of any single organism to date, and was used to develop the first whole-cell computational model. The M. genitalium database was curated from over 900 primary research articles, reviews, books, and databases. The M. genitalium database is extensively cross-referenced to external resources including BioCyc, KEGG, and UniProt.
WholeCellKB is also an open-source web-based software program for constructing model organism databases. The WholeCellKB software provides an extensive and fully customizable data model that fully describes individual species including the structure and function of each gene, protein, reaction, and pathway.
WholeCellKB is freely accessible via a web-based user interface as well as via a RESTful web service.
Source: FAIRsharing
Record maintainer: See the corresponding part in the FAIRsharing record
Record license: Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license

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