Rsrc
J-GLOBAL ID:202010014096149192   Research Resource code:NBDC02483 Update date:Nov. 05, 2019

MemProtMD

MemProtMD
Owning Organization:
  • SBCB Unit, Department of Biochemistry, University of Oxford
Resource classification: Database
Tag (subject)  (1): Protein
Tag (data type)  (2): 3D structure ,  Image/Movie
Species (1): All (NCBI Taxonomy ID: 1)
Overview:
MemProtMD is a database about intrinsic membrane protein structures derived from Protein Data Bank, which inserted into simulated lipid bilayers using Coarse-Grained Self Assembly Molecular Dynamics simulations. Each entry contains the results of simulations and subsequent analysis providing interactive 3D visualizations of the assembled bilayer and 2D visualizations of lipid contact data and membrane protein topology. It allows users to search by keywords, PDB ID or Uniprot ID, or browsed using classification systems, such as Pfam, Gene Ontology annotation, mpstruc or the Transporter Classification Database. Data are provided to run further molecular simulations of proteins in the database.
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

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