Rsrc
J-GLOBAL ID:202010018136040216   Research Resource code:NBDC02484 Update date:Nov. 05, 2019

MethMotif

MethMotif
Owning Organization:
  • Cancer Science Institute of Singapore
Resource classification: Database
Tag (subject)  (5): Genome/Gene ,  Epigenetics ,  DNA ,  Protein ,  Cell/Organelle
Tag (data type)  (2): Sequence ,  Interaction/Pathway
Species (2): Homo sapiens (NCBI Taxonomy ID: 9606) ,  Mus musculus (NCBI Taxonomy ID: 10090)
Overview:
MethMotif is an integrative database of transcription factor binding motifs coupled with DNA methylation profiles using the results of ChIP-seq and Whole Genome Bisulfite Sequencing (WGBS). The data in this database were originally downloaded from ENCODE and GEO. It is constructed with following parts;
1) Explore in Heatmap:
Distribution of CG beta scores in factor peak regions
2) MethMotif Database:
A two-dimensional database
3) MethMotif Batch Query:
A tool implemented in MethMotif website, which allows users to study the occurrences of TFBSs and their respective DNA methylation states within a given list of genomic loci.
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

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