Rsrc
J-GLOBAL ID:202010018216143210
Research Resource code:NBDC01764
Update date:Jul. 24, 2024
PhylomeDB
PhylomeDB
Owning Organization:
-
CRG (Comparative Genomics Group)
Resource classification:
Data,Database
Tag (subject) (1):
Genome/Gene
Tag (data type) (2):
Classification
, Sequence
Species (1):
All (NCBI Taxonomy ID: 1)
Overview:
PhylomeDB is a unique knowledge base providing public access to minable and browsable catalogues of pre-computed, genome-wide collections of annotated sequences, alignments and phylogenies (i.e. phylomes) of homologous genes, as well as to their corresponding phylogeny-based orthology and paralogy relationships. In addition, PhylomeDB trees and alignments can be downloaded for further processing to detect and date gene duplication events, infer past events of inter-species hybridization and horizontal gene transfer, as well as to uncover footprints of selection, introgression, gene conversion, or other relevant evolutionary processes in the genes and organisms of interests. The v5 release also represents a significant core data expansion, with the database providing access to 534 phylomes, comprising over 8 million trees, and homology relationships for genes in over 6000 species. This makes PhylomeDB the largest and most comprehensive public repository of gene phylogenies
Source:
FAIRsharing
Record maintainer:
See the corresponding part in the FAIRsharing record
Record license:
Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license
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