Rsrc
J-GLOBAL ID:202010019147229619   Research Resource code:NBDC02523 Update date:Apr. 22, 2020

Trips-Viz

Trips-Viz
Owning Organization:
  • University College Cork
Resource classification: Database
Tag (subject)  (2): Genome/Gene ,  RNA
Tag (data type)  (1): Expression
Species (8): Caenorhabditis elegans (NCBI Taxonomy ID: 6239) ,  Drosophila melanogaster (NCBI Taxonomy ID: 7227) ,  Escherichia coli (NCBI Taxonomy ID: 562) ,  Homo sapiens (NCBI Taxonomy ID: 9606) ,  Mus musculus (NCBI Taxonomy ID: 10090) ,  Rattus norvegicus (NCBI Taxonomy ID: 10116) ,  Saccharomyces cerevisiae (NCBI Taxonomy ID: 4932) ,  Schizosaccharomyces pombe (NCBI Taxonomy ID: 4896)
Overview:
Trips-viz is a database for Ribosome profiling (Ribo-seq) data that have been produced using publicly available ribosome profiling and corresponding RNA-seq datasets from SRA.
Trip-Viz provides a set of graphical analysis tools to understand a Ribo-Seq result and to compare translated features across different samples of Ribo-Seq, which are able to use for;
1) interactive visualization of an aggregate of ribosome profiling data at subcodon resolution in the context of single transcripts,
2) plotting data obtained from multiple different samples on the same transcript,
3) getting meta-information from an entire dataset, aggregating information from multiple transcripts to assess the quality of datasets,
4) finding genes whose expression is significantly up/down-regulated relative to others.
Users can also upload and analyze their own data.
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

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