Rsrc
J-GLOBAL ID:202010019344437061   Research Resource code:NBDC02284 Update date:Jun. 13, 2019

Project Tycho: Data for Health

Project Tycho: Data for Health
Owning Organization:
  • Project Tycho
  • University of Pittsburgh
  • University of Pittsburgh Medical Center
  • Public Health Dynamics Laboratory, University of Pittsburgh
  • Department of Epidemiology, University of Pittsburgh
Resource classification: Database
Tag (subject)  (2): Organism ,  Health/Disease
Tag (data type)  (1): Phenotype
Species (55): Babesiidae (NCBI Taxonomy ID: 32594) ,  Bacillus anthracis (NCBI Taxonomy ID: 1392) ,  Borrelia (NCBI Taxonomy ID: 138) ,  Brucella (NCBI Taxonomy ID: 234) ,  Campylobacter (NCBI Taxonomy ID: 194) ,  Chalmydia psittaci (NCBI Taxonomy ID: 83554) ,  Chlamydia (NCBI Taxonomy ID: 810) ,  Chlamydia trachomatis (NCBI Taxonomy ID: 813) ,  Clostridium tetani (NCBI Taxonomy ID: 1513) ,  Coccidioides (NCBI Taxonomy ID: 5500) ,  Corynebacterium diphtheriae (NCBI Taxonomy ID: 1717) ,  Cryptosporidium (NCBI Taxonomy ID: 5806) ,  Dengue virus (NCBI Taxonomy ID: 12637) ,  Ehrlichia chaffeensis (NCBI Taxonomy ID: 945) ,  Entamoeba histolytica (NCBI Taxonomy ID: 5759) ,  Enterobacteriaceae (NCBI Taxonomy ID: 543) ,  Enterovirus C (NCBI Taxonomy ID: 138950) ,  Escherichia coli (NCBI Taxonomy ID: 562) ,  Eschericia coli O157:H7 (NCBI Taxonomy ID: 83334) ,  Firmicutes (NCBI Taxonomy ID: 1239) ,  Francisella tularensis (NCBI Taxonomy ID: 263) ,  Giardia (NCBI Taxonomy ID: 5740) ,  Haemophilus influenzae (NCBI Taxonomy ID: 727) ,  Hepatitis C virus (NCBI Taxonomy ID: 11103) ,  Hepatitis b virus (NCBI Taxonomy ID: 10407) ,  Homo sapiens (NCBI Taxonomy ID: 9606) ,  Human hepatitis A virus (NCBI Taxonomy ID: 208726) ,  Human herpesvirus 3 (NCBI Taxonomy ID: 10335) ,  Human immunodeficiency virus (NCBI Taxonomy ID: 12721) ,  Legionella (NCBI Taxonomy ID: 445) ,  Listeria monocytogenes (NCBI Taxonomy ID: 1639) ,  Measles virus (NCBI Taxonomy ID: 11234) ,  Mumps virus (NCBI Taxonomy ID: 1979165) ,  Mycobacterium leprae (NCBI Taxonomy ID: 1769) ,  Mycobacterium tuberculosis (NCBI Taxonomy ID: 1773) ,  Neisseria gonorrhoeae (NCBI Taxonomy ID: 485) ,  Neisseria meningitidis (NCBI Taxonomy ID: 487) ,  Neisseria meningitidis serogroup B (NCBI Taxonomy ID: 491) ,  Plasmodium (NCBI Taxonomy ID: 418103) ,  Rickettsia rickettsii|783 ,  Rickettsiales (NCBI Taxonomy ID: 766) ,  Rubella virus (NCBI Taxonomy ID: 11041) ,  Salmonella (NCBI Taxonomy ID: 590) ,  Salmonella enterica subsp.enterica serovar Typhi (NCBI Taxonomy ID: 90370) ,  Shigella (NCBI Taxonomy ID: 620) ,  Streptococcus pneumoniae (NCBI Taxonomy ID: 1313) ,  Streptococcus sp. group A (NCBI Taxonomy ID: 36470) ,  Treponema pallidum (NCBI Taxonomy ID: 160) ,  Trichinella (NCBI Taxonomy ID: 6333) ,  Variola virus (NCBI Taxonomy ID: 10255) ,  Vibrio cholerae (NCBI Taxonomy ID: 666) ,  West Nile virus (NCBI Taxonomy ID: 11082) ,  Yellow fever virus (NCBI Taxonomy ID: 11089) ,  Anaplasma phagocytophilum (NCBI Taxonomy ID: 948) ,  unidentified influenza virus (NCBI Taxonomy ID: 11309)
Overview:
In 2013, we released the first version of Project Tycho containing weekly case counts for 50 notifiable conditions reported by health agencies in the United States for 50 states and 1284 cities between 1888 and 2014. Over the past four years, over 3700 users have registered to use Project Tycho data for a total of 40 creative works including peer-reviewed research papers, visualizations, online applications, and newspaper articles.
Project Tycho 2.0 has expanded its scope to a global level and improved standardization, following FAIR (Findable, Accessible, Interoperable, and Reusable) Data Principles where possible. Project Tycho 2.0 includes case counts for 28 additional notifiable conditions for the US and includes data for dengue-related conditions for 99 countries between 1955 and 2010, obtained from the World Health Organization and Ministries of Health. Project Tycho 2.0 datasets are represented in a standard format and include standard SNOMED-CT codes for reported conditions, ISO 3166 codes for countries and first administrative level subdivisions, and NCBI TaxonID numbers for pathogens. Metadata for Project Tycho datasets are available on the website in human-readable format, but also in machine-interpretable DATS and DataCite metadata files.
Source: FAIRsharing
Record maintainer: See the corresponding part in the FAIRsharing record
Record license: Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license

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