J-GLOBAL ID:202110007753955499   Research Resource code:NBDC02584 Update date:Sep. 28, 2021

AlphaFold DB: AlphaFold Protein Structure Database

AlphaFold DB: AlphaFold Protein Structure Database
Owning Organization:
  • EMBL-EBI (European Bioinformatics Institute)
Resource classification: Data,Database
Tag (subject)  (1): Protein
Tag (data type)  (1): 3D structure
Species (21): Arabidopsis thaliana (NCBI Taxonomy ID: 3702) ,  Caenorhabditis elegans (NCBI Taxonomy ID: 6239) ,  Candida albicans (NCBI Taxonomy ID: 5476) ,  Danio rerio (NCBI Taxonomy ID: 7955) ,  Dictyostelium discoideum (NCBI Taxonomy ID: 44689) ,  Drosophila melanogaster (NCBI Taxonomy ID: 7227) ,  Escherichia coli (NCBI Taxonomy ID: 562) ,  Glycine max (NCBI Taxonomy ID: 3847) ,  Homo sapiens (NCBI Taxonomy ID: 9606) ,  Leishmania infantum (NCBI Taxonomy ID: 5671) ,  Methanocaldococcus jannaschii (NCBI Taxonomy ID: 2190) ,  Mus musculus (NCBI Taxonomy ID: 10090) ,  Mycobacterium tuberculosis (NCBI Taxonomy ID: 1773) ,  Oryza sativa (NCBI Taxonomy ID: 4530) ,  Plasmodium falciparum (NCBI Taxonomy ID: 5833) ,  Rattus norvegicus (NCBI Taxonomy ID: 10116) ,  Saccharomyces cerevisiae (NCBI Taxonomy ID: 4932) ,  Schizosaccharomyces pombe (NCBI Taxonomy ID: 4896) ,  Staphylococcus aureus (NCBI Taxonomy ID: 1280) ,  Trypanosoma cruzi (NCBI Taxonomy ID: 5693) ,  Zea mays (NCBI Taxonomy ID: 4577)
AlphaFold DB is a database for protein structure predictions for human and 20 other key organisms. Each entry contains basic information about the protein and three separate outputs from AlphaFold, which are 3D coordinates (including side chains appeared when users click on the sequence in the viewer)
, a per-residue confidence metric called pLDDT, and predicted aligned error of the protein.
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

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