Rchr
J-GLOBAL ID：202201004007564640   Update date: Feb. 09, 2026

Konno Naoki

コンノ ナオキ | Konno Naoki
Affiliation and department：
Stanford University Department of Genetics, Stanford School of Medicine

About Stanford University Department of Genetics, Stanford School of Medicine


Job title： Postdoctoral Scholar
Other affiliations (1)：
Homepage URL  (2)： https://sites.google.com/view/naoki-konno/ja ,  https://sites.google.com/view/naoki-konno/
Research field  (1)： Evolutionary biology
Research keywords  (9)： Evo-Devo ,  Single-cell omics ,  Cardiac development ,  Phylogenetic comparative method ,  Cell lineage ,  Machine learning ,  Genome evolution ,  Microbiology ,  Evolution prediction
Research theme for competitive and other funds  (6)：
  • 2026 - 2027 Deciphering congenital heart defects through single-cell evolution and in silico perturbation
  • 2024 - 2027 KAKENHI
  • 2025 - 2025 Deciphering constraints and predictability of vertebrate heart evolution
  • 2024 - 2025 KAKENHI
  • 2024 - 2025 Convergent evolution of dual-function dehydrogenase
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Papers (9)：
  • Ryuichi Ono†, Naoki Konno†, Yuki Nishimura, Chikara Furusawa. Host range and antibiotic resistance dissemination are shaped by distinct survival strategies of conjugative plasmids. Nucleic Acids Research. 2026. 54. 2
  • Morito Sakuma, Naoki Konno, Sevan Gholipour, John Z. Chen, Nobuhiko Tokuriki†. Widespread promiscuous alkaline phosphatases underscore ancient microbial phosphite utilization. Proceedings of the National Academy of Sciences. 2025. 122. 49
  • Naoki Konno†, Keita Miyake, Satoshi Nishino, Kimiho Omae, Haruaki Yanagisawa, Saburo Tsuru, Yuki Nishimura, Masahide Kikkawa, Chikara Furusawa, Wataru Iwasaki. Repeatability of protein structural evolution following convergent gene fusions. Nature Communications. 2025. 16. 1
  • Yui Uchida†, Tasuku Ishida, Satomi Ono, Shunya Kuroda, Aimi Kobayashi, Naoki Konno, Yoshitaka Tanaka, Tetsuro Nishizawa, Junki Yoshida, Ken-ichiro Yoshimoto, et al. Meeting Report: The First Evo-Devo Young Researchers Meeting. Development, Growth & Differentiation. 2025
  • Chunhui Hao*†, Naoki Konno*†, Makoto Ito, Laurence J Belcher, Wataru Iwasaki, Stuart West. Cooperation shapes bacterial niche breadth evolution and patterns of diversification. BioRxiv. 2024
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Books (1)：
  • Augmented Biology-the next X
    Yodosha 2021 ISBN:9784758122528
Lectures and oral presentations  (29)：
  • Predictability of Microbial Evolution: Insights from Genomics and Structural Biology
    (Innovative Genomics Institute Seminar Series 2025)
  • 大規模データから生命進化の過去を理解し未来を予測する
    (Life and Planetary Evolution Science (LIPES) Group, Univ. Osaka 2025)
  • 高感度遺伝子探索でタンパク質進化の歴史とパターンを紐解く
    (Restoractive Cellular Functional Science Symposium 2025)
  • Toward predictability of microbial genome evolution
    (Japanese Society of Genome Microbiology Young Scientist Meeting Seminar 2025)
  • Toward predictive biology of evolution
    (2025)
ｍore...
Education (3)：
  • 2022 - 2025 The University of Tokyo Graduate School of Science Department of Biological Sciences (PhD)
  • 2020 - 2022 The University of Tokyo Graduate School of Science Department of Biological Sciences (Master degree)
  • 2016 - 2020 The University of Tokyo Faculty of Science Undergraduate Program for Bioinformatics and Systems Biology
Professional career (1)：
  • Ph.D. (The University of Tokyo)
Work history (7)：
  • 2025/06 - 現在 Stanford University Department of Genetics, Stanford School of Medicine Postdoctoral scholar
  • 2025/04 - 現在 Universal Biology Institute, Graduate School of Science, The University of Tokyo Visiting Researcher
  • 2026/01 - 2027/12 American Heart Association Postdoctoral Fellow
  • 2025/04 - 2025/05 Japan Society for the Promotion of Science Research Fellow (PD)
  • 2024/04 - 2025/03 Japan Society for the Promotion of Science Research Fellow (DC2)
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Awards (15)：
  • 2026/02 - Inoue Foundation for Science Inoue Research Award for Young Scientists
  • 2025/03 - The University of Tokyo The School of Science Encouragement Award (Doctor program), The University of Tokyo
  • 2025/03 - Society of Genome Microbiology, Japan Best Poster Award
  • 2025/02 - Life Science Research Foundation Finalist
  • 2024/09 - Japanese Society for Young Bioinformatics Researchers CyberomiX Award (Best Poster Award)
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