Rsrc
J-GLOBAL ID:202210021321993594   Research Resource code:NBDC02628 Update date:Sep. 28, 2023

RNAapt3D

RNAapt3D
Owning Organization:
Resource classification: Data,Database
Tag (subject)  (3): RNA ,  Protein ,  Drug
Tag (data type)  (3): Sequence ,  3D structure ,  Interaction/Pathway
Species (1): Homo sapiens (NCBI Taxonomy ID: 9606)
Overview:
RNAapt3D is a database of RNA aptamer which contains RNA sequences, their secondary/tertiary structural information, target proteins of RNA aptamers and network of RNA-protein interaction. The tertiary structures are predicted by a given RNA sequence considering a wide variety of secondary structures with a modelling tool, RASCAL, and molecular dynamics simulations. This database can be used to provide insights for tertiary structural analysis, motif search with base flip position and a starting point by RNA-protein complex molecular simulations. This database facilitates a study on the design of RNA aptamer for a target molecule and improves the efficiency and the productivity in candidate selection.
Source: NBDC
Record maintainer: Integbio Database Catalog
Record license: Creative Commons CC0 license

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