Rsrc
J-GLOBAL ID:202210021321993594
Research Resource code:NBDC02628
Update date:Sep. 28, 2023
RNAapt3D
RNAapt3D
Owning Organization:
Resource classification:
Data,Database
Tag (subject) (3):
RNA
, Protein
, Drug
Tag (data type) (3):
Sequence
, 3D structure
, Interaction/Pathway
Species (1):
Homo sapiens (NCBI Taxonomy ID: 9606)
Overview:
RNAapt3D is a database of RNA aptamer which contains RNA sequences, their secondary/tertiary structural information, target proteins of RNA aptamers and network of RNA-protein interaction. The tertiary structures are predicted by a given RNA sequence considering a wide variety of secondary structures with a modelling tool, RASCAL, and molecular dynamics simulations. This database can be used to provide insights for tertiary structural analysis, motif search with base flip position and a starting point by RNA-protein complex molecular simulations. This database facilitates a study on the design of RNA aptamer for a target molecule and improves the efficiency and the productivity in candidate selection.
Source:
NBDC
Record maintainer:
Integbio Database Catalog
Record license:
Creative Commons CC0 license
Return to Previous Page