Rchr
J-GLOBAL ID：202401008203055710   Update date: Mar. 11, 2026

Matsuda Yudai

マツダ ユウダイ | Matsuda Yudai
Affiliation and department：
City University of Hong Kong Department of Chemistry

About City University of Hong Kong Department of Chemistry


Job title： Associate Professor
Homepage URL  (1)： http://staffweb1.cityu.edu.hk/ymatsuda/
Research field  (2)： Bioorganic chemistry ,  Environmental and pharmaceutical development resources
Research keywords  (4)： Natural Product Chemistry ,  Biosynthesis ,  Filamentous Fungi ,  Genome Mining
Research theme for competitive and other funds  (15)：
  • 2025 - 2027 Global genome mining in fungi for the discovery of hidden families of biosynthetic enzymes and associated natural products
  • 2023 - 2026 Global genome mining for unexploited bioactive natural products in filamentous fungi
  • 2022 - 2024 Broadening the chemical space of fungal meroterpenoids and the enzymatic repertoire for their biosynthesis
  • 2020 - 2022 Comprehensive Understanding and Engineering of Fungal Xanthone Biosynthesis
  • 2020 - 2022 Synthetic Biological Studies on Fungal Antitumor Polyketides Violaceoids by Utilizing the Replication-Cycle Reaction Method
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Papers (55)：
  • Zerui Yang, Yinqiao Li, Yudai Matsuda, Linqi Song. mHMG-DTI: A Drug-Target Interaction Prediction Framework Combining Modified Hierarchical Molecular Graphs and Improved Convolutional Block Attention Module. Lecture Notes in Computer Science. 2025. 191-202
  • Qiaolin JI, Yudai Matsuda. Biosynthesis of Depsides, Depsidones, and Diphenyl Ethers from Fungi and Lichens. Asian Journal of Organic Chemistry. 2025. 14. 2
  • Qiaolin Ji, Xingxing Wei, Shengkun Liu, Yudai Matsuda. Involvement of a Noncanonical Polyketide Synthase-Nonribosomal Peptide Synthetase Hybrid in the Biosynthesis of Sterol-C4-methyl Oxidase Inhibitor PF1163A. Organic Letters. 2025
  • Zerui Yang, Wei Shao, Yudai Matsuda, Linqi Song. iResNetDM: An interpretable deep learning approach for four types of DNA methylation modification prediction. Computational and Structural Biotechnology Journal. 2024. 23. 4214-4221
  • Longhui Yu, Hiroshige Ogawa, Shangzhao Li, Tsoh Lam Cheung, Wenchao Liu, Dexiu Yan, Yudai Matsuda, Yusuke Kobayashi, Zhihong Guo, Kotaro Ikeda, et al. Concise Synthesis of Cyctetryptomycin A and B Enabled by Zr-Catalyzed Dimerization. Angewandte Chemie International Edition. 2024. e202414295
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MISC (11)：
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Lectures and oral presentations  (56)：
  • Global Genome Mining in Fungi for Natural Product Discovery
    (2024 US-Japan Seminar on the Biosynthesis of Natural Products)
  • Global genome mining in fungi for natural product discovery
    (Frontiers in Medicinal Chemistry: A Forum for Innovation and Discovery)
  • Oxidative rearrangements in fungal meroterpenoid biosynthesis
    (2023 International Joint Meeting of the 23rd International Conference on Cytochrome P450 and the 38th Annual Meeting of the Japanese Society for the Study of Xenobiotics (2023 ICCP450/JSSX))
  • Discovery and characterization of fungal depside synthases
    (The 65th Symposium on the Chemistry of Natural Products 2023)
  • Biosynthesis of Fungal Meroditerpenoids Setosusin and Brevione E
    (2nd JNU-UTokyo Joint Seminar on Natural Product Biosynthesis)
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Education (3)：
  • - 2015 The University of Tokyo Ph.D., Graduate School of Pharmaceutical Sciences
  • 2010 - 2012 The University of Tokyo Graduate School of Pharmaceutical Sciences M.Sc., Department of Pharmaceutical Sciences
  • 2006 - 2010 The University of Tokyo Faculty of Pharmaceutical Sciences Department of Pharmaceutical Sciences
Professional career (1)：
  • Ph.D. in Pharmaceutical Sciences (The University of Tokyo)
Work history (8)：
  • 2024/07 - 現在 City University of Hong Kong Department of Chemistry Associate Professor
  • 2018/04 - 2024/06 City University of Hong Kong Department of Chemistry Assistant Professor
  • 2017/10 - 2018/03 The University of Tokyo Graduate School of Pharmaceutical Sciences Project Researcher
  • 2015/10 - 2017/09 Technical University of Denmark Department of Biotechnology and Biomedicine Postdoc
  • 2014/04 - 2015/09 The University of Tokyo Graduate School of Pharmaceutical Sciences Assistant Professor
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Awards (9)：
  • 2025/05 - College of Science, City University of Hong Kong Outstanding Young Researcher Award
  • 2024/09 - American Society of Pharmacognosy Jack L. Beal Award
  • 2023/10 - Stanford University Stanford's top 2% most highly cited scientists 2023
  • 2022/11 - Stanford University Stanford's top 2% most highly cited scientists 2022
  • 2017/02 - 公益財団法人 井上科学振興財団 井上研究奨励賞
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