Kota Kasahara, Yuki Takimoto, Ryoi Ashida, Takuya Takahashi. Effects of ion-water Lennard-Jones potentials on the hydration dynamics around a monovalent atomic ion in molecular dynamics simulations. Molecular Simulation. 2019. 45. 19. 1572-
Takuya Shimato, Kota Kasahara, Junichi Higo, Takuya Takahashi. Effects of number of parallel runs and frequency of bias-strength replacement in generalized ensemble molecular dynamics simulations. Peer J. Phys. Chem. 2019. 1:e4
Ryosuke Iwai, Kota Kasahara, Takuya Takahashi. Influence of various parameters in the replica-exchange molecular dynamics method: Number of replicas, replica-exchange frequency, and thermostat coupling time constant. Biophysics and Physicobiology. 2018. 15. 165-172
Naoki Ogasawara, Kota Kasahara, Ryosuke Iwai, Takuya Takahashi. Unfolding of α-helical 20-residue poly-glutamic acid analyzed by multiple runs of canonical molecular dynamics simulations. PeerJ. 2018. 2018. MAY. e4769