2019 - 2022 Elucidation of the interaction between human commensal bacterial flora and host genetic alterations in the digestive tract
2019 - 2022 経験による大脳抑制性ニューロンの形態形成と機能分化メカニズムの解析
2019 - 2022 The role of lipid mediator in the tumor immune microenvironment of breast cancer and its therapeutic application
2019 - 2022 Clinical significance of comprehensive genomic analysis in HER2 positive gastric cancer
2019 - 2022 Verification of microsatellite instability status evaluated by cancer gene panel testing and clinical significance in the drug treatment for gastric cancer
2019 - 2021 Challenges to the identification of neutrophil subsets involved in the development and remission of inflammation
2018 - 2021 Mechanisms of cancer metabolism and drug resistance regulated by S1P in triple negative breast cancer
2018 - 2021 Elucidation of oral-gut association based on Elucidation of oral-gut association based on multi-omics analyzes
2018 - 2021 High-dimensional data analysis platform realizing cancer genome medicine
2018 - 2021 The new classification of colorectal cancer focusing on differences of molecular mechanisms in TGF-b signal pathway
2017 - 2020 New classification of gastric cancer based on genome analysis for precision medicine
2017 - 2019 The pathological role of secreted protein in promoting fibrosis in non alcoholic steatohepatitis.
2017 - 2019 Establishment and development of metagenomics-based priodontitis diagnostic platform
2016 - 2019 Brown adipose tissue dysfunction promotes metabolic disorder in a failing heart.
2016 - 2019 Analysis of metabolic remodeling using metabolomics in cardiopulmonary vascular disease
2016 - 2019 Elucidation of Vascular Remodeling through the Senescence Signal in Aortic Diseases
2016 - 2018 Is the iPS marker "TRA-1-60" an indicator of cancer intractability against therapeutics?
2014 - 2018 Profiling of disease factors in human microbiome
2015 - 2017 Molecular mechanism analysis of dormant cells causing refractory nature of bacterial infections
2014 - 2017 Neural mechanisms of visual communications revealed with electrocorticography.
2013 - 2015 Sponge-metabolomics for the discovery of new bioactive natural products
2009 - 2010 Analysis for functional diversity of environmental genomes
2008 - 2009 ゲノムの多様性と環境との相互作用の解析
生命システムと環境の相互作用の理解
Toward understanding interaction between life and the environment
Keisuke Kodama, Yiwei Ling, Hiroshi Ichikawa, Toshifumi Wakai, Shujiro Okuda. Evaluation of potential of targeted sequencing through mutational signature simulation. PLOS One. 2025
Tamaki Endoh, Yiwei Ling, Shujiro Okuda, Miki Imanishi. Identification of Endogenous Sequences Interacting with METTL3/METTL14 RNA Methyltransferase. ChemBioChem. 2025
Nobuaki Miura, Tsuyoshi Tabata, Yasushi Ishihama, Shujiro Okuda. Phylogenetic tree-based amino acid sequence generation for proteomics data analysis of unknown species. Computational and Structural Biotechnology Journal. 2025
Yushi Takahashi, Niclas G. Karlsson, Shujiro Okuda, Kiyoko F. Aoki-Kinoshita. Cooperation of GlycoPOST and UniCarb-DR towards a comprehensive glycomics data repository workflow. Analytical and Bioanalytical Chemistry. 2025
松田史生, 平山明由, 早坂亮祐, 高橋政友, 吉沢明康, 西田孝三, 鳥越大平, 木内貴仁, 松沢佑紀, 津川裕司, et al. The Shin-MassBank project: Generation of MassBank records from DDA datasets. 質量分析総合討論会講演要旨集. 2024. 72nd
奥田修二郎, 木内貴仁, 吉沢明康, 松田史生. MB-POST: a repository database for metabolomics mass spectrometry data. 質量分析総合討論会講演要旨集. 2024. 72nd
Computational Methods for the Interpretation of Clinical MetaOmics Data: from a ‘Bag of Genes’ to Ecosystem Networks and Clinical Markers.
(International Human microbiome Congress 2011)
From Parts Lists to Ecosystem Networks: Development of a 2nd Generation Toolkit for MetaOmics Analysis.
(Human Microbiome Research Conference 2010)
From Parts Lists to Ecosystem Networks: Development of a 2nd Generation Toolkit for MetaOmics Analysis.
(Human Microbiome Research Conference 2010)
1997 - 2001 Ritsumeikan University College of Science and Engineering
Work history (4)：
2021/04 - 現在 新潟大学医学部メディカルAIセンター 教授
2017/04 - 2021/03 新潟大学大学院医歯学総合研究科 准教授
2013/02 - 2017/03 新潟大学大学院医歯学総合研究科 テニュア・トラック准教授
2008/04 - 2013/01 Ritsumeikan University College of Llife Science, Department of Bioinformatics, Institute of Science and Engineering College of Life Sciences Department of Bioinformatics Assistant Professor
Association Membership(s) (5)：
Japanese Society for Bioinformatics
, Molecular Biology Society of Japan
, International society for computational biology
, Human proteome organization
, Japanese Proteomics Society
