2013 - 2015 Possible role of parasexal cycle for the evolution of endophytic fungi.
2012 - 2015 Quick isolation of rice QTL by whole genome sequencing
2011 - 2014 Elucidation of molecular mechanism of rice blast resistance
2009 - 2011 Relationship between regulation of starch metabolism in leaf sheaths at the post-heading stage and grain filling in rice
2008 - 2011 Cloning of avirulence genes in Pyricularia spp. using super SAGE and comparative analysis of their instability
2006 - 2009 Coevolution and cospeciation in plant-pollinator and plant-herbivore interactions
2007 - 2008 Evolution, diversification and maintenance mechanism of the weediness supergene in pearl millet
2006 - 2008 Large-scale DNA polymorphisms study of rice
2005 - 2006 The structure and function of "weediness supergene" responsible for the crop-weed complex of pearl millet
1994 - 1996 Molecular ecology of plant populations using microsatellite genetic markers
1994 - 1996 Biodiversity in the canopy of tropical rainforests
1995 - 1995 植物の酵素多型と適応的分化の分子的基礎
1993 - 1994 Population biology and molecular systematics of northern temperate elements of Arcto-Tertiary origin in North America
1993 - 1993 オニドコロ自然集団における種内変異と地理的文化に関する分子集団遺伝学的研究
1992 - 1993 Plant reproductive systems and animal seasonal dynamics - Long-term study of dipterocarp forests in Sarawak -
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Papers (214)：
Yusaku Sugimura, Kaori Oikawa, Yu Sugihara, Hiroe Utsushi, Eiko Kanzaki, Kazue Ito, Yumiko Ogasawara, Tomoaki Fujioka, Hiroki Takagi, Motoki Shimizu, et al. Impact of rice GENERAL REGULATORY FACTOR14h (GF14h) on low-temperature seed germination and its application to breeding. PLOS Genetics. 2024. 20. 8. e1011369-e1011369
Rafał Zdrzałek, Yuxuan Xi, Thorsten Langner, Adam R Bentham, Yohann Petit-Houdenot, Juan Carlos De la Concepcion, Adeline Harant, Motoki Shimizu, Vincent Were, Nicholas J Talbot, et al. Bioengineering a plant NLR immune receptor with a robust binding interface toward a conserved fungal pathogen effector. Proceedings of the National Academy of Sciences of the United States of America. 2024. 121. 28. e2402872121
Soichiro Asuke, Kohei Morita, Motoki Shimizu, Fumitaka Abe, Ryohei Terauchi, Chika Nago, Yoshino Takahashi, Mai Shibata, Motohiro Yoshioka, Mizuki Iwakawa, et al. Evolution of wheat blast resistance gene Rmg8 accompanied by differentiation of variants recognizing the powdery mildew fungus. Nature plants. 2024
Mohammad Shahjahan Monjil, Hiroaki Kato, Satomi Ota, Kentaro Matsuda, Natsumi Suzuki, Shiho Tenhiro, Ayane Tatsumi, Sreynich Pring, Atsushi Miura, Maurizio Camagna, et al. Two structurally different oomycete lipophilic microbe-associated molecular patterns induce distinctive plant immune responses. Plant Physiology. 2024
Juan Carlos De la Concepcion, Thorsten Langner, Koki Fujisaki, Xia Yan, Vincent Were, Anson Ho Ching Lam, Indira Saado, Helen J Brabham, Joe Win, Kentaro Yoshida, et al. Zinc-finger (ZiF) fold secreted effectors form a functionally diverse family across lineages of the blast fungus Magnaporthe oryzae. PLoS pathogens. 2024. 20. 6. e1012277
及川香梨, 清水元樹, 宮路直実, 竹田匠, 藤崎恒喜, 寺内良平, 寺内良平. Identification of OsHIPP20, a rice susceptibility gene (S-gene) against blast fungus. 育種学研究. 2023. 25
伊藤和江, 菅広和, 吉津祐貴, 阿部陽, 大里達朗, 寺内良平, 清水元樹. Identification of blast resistance genes in foxtail millet. 育種学研究. 2023. 25
工藤葵, 杉原優, 阿部陽, 及川香梨, 夏目俊, 清水元樹, 伊藤和江, 辻村真衣, 寺地徹, 太田敦士, et al. Identification of a candidate gene for sex determination in Dioscorea tokoro. 育種学研究. 2023. 25
Next-generation breeding of rice by whole-genome approaches. In: Sasaki, T. and Ashikari, M. (eds) Rice Genomics, Genetics and Breeding.
Springer 2018
Whoe genome sequencing to identify genes and QTL in rice. In: Sablok, G., Kumar, S., Ueno, S., Kuo, J., Varotto, C. (eds) Advances in the Understanding of Biological Sciences Using Next Generation Sequencing (NGS) Approaches.
Springer 2015
SuperSAGE as an analytical tool for host and viral gene expression. Methods in Molecular Biology
2015
Protoplast cell death assay to study Magnaporthe oryzae AVR gene function in rice. Methods in Molecular Biology
2014
DeepSuperSAGE: high-throughput transcriptome sequencing with now- and next-generation sequencing technologies. In: Tag-based next generation sequencing (Harbers, M. and Kahl, G. eds),
Wiley-Blackwell, 2012
