Research theme for competitive and other funds (12):
2024 - 2029 A Study of Science and Process Construction of Microbial Gas-phase Reaction
2019 - 2024 High performance microbial cell factories development by model based metabolic design and adaptive laboratory evolution
2021 - 2024 微細藻類の変動光に対する光化学系と代謝のシステム解析
2018 - 2023 Synthesis of L- and D-homopoly-gamma-glutamic acids and elucidation of the mechanism
2019 - 2022 Identification of rate limiting step in metabolic pathway for bioproductions based on genome scale model
2018 - 2021 High throughput technique for measuring specific enzyme activities of a metabolic pathway
2017 - 2019 Development of Simulation System of Cancer Metabolism
2016 - 2019 Identification of Limiting Step and Optimization of Metabolism based on Analysis of Dynamic Behaviors of Multilayers Omics Data
2016 - 2018 Development of process control method based on metabolic visualiztion technique
2012 - 2016 Creation of Stress Tolerant Microbial Cell Factories based on Multiomics Analysis of Laboratory Evolution Process
2010 - 2011 Development of gene expression-metabolic model of Escherichia coli
2008 - 2009 細胞内中間代謝物の同位体標識情報に基づく代謝制御機能の解析
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Papers (69):
Koichiro Ueno, Shogo Sawada, Mai Ishibashi, Yoshiki Kanda, Hiroshi Shimizu, Yoshihiro Toya. Identification of a novel NADPH generation reaction in the pentose phosphate pathway in Escherichia coli using mBFP. Journal of Bacteriology. 2024
Yujiro Hirose, Daniel C Zielinski, Saugat Poudel, Kevin Rychel, Jonathon L Baker, Yoshihiro Toya, Masaya Yamaguchi, Almut Heinken, Ines Thiele, Shigetada Kawabata, et al. A genome-scale metabolic model of a globally disseminated hyperinvasive M1 strain of Streptococcus pyogenes. mSystems. 2024. 9. 9. e0073624
Yoshihiro Toya, Hiroshi Shimizu. Coupling and uncoupling growth and product formation for producing chemicals. Current Opinion in Biotechnology. 2024. 87. 103133
小林祐摩, 佐野海瑚人, 弘埜陽子, 松田史生, 石井純, 原清敬, 清水浩, 戸谷吉博. Applications of a light-driven proton pump to enhance the weak acid tolerance and bioproduction in Escherichia coli. 日本生物工学会大会講演要旨集. 2023. 75th
二井手哲平, 杉木創, 森聖也, 戸谷吉博, 清水浩. Application of Logistic Regression Models for Identification of Residues Determining Substrate Specificity in Enzymes. 日本生物工学会大会講演要旨集. 2023. 75th
宮脇佳汰, 二井手哲平, 戸谷吉博, 清水浩. Thermal stability design of enzyme incorporated with evolutionary and structural information. 日本生物工学会大会講演要旨集. 2023. 75th
三吉健太, 一色衣香, 二井手哲平, 戸谷吉博, 清水浩. Metabolic pathway engineering for butyrolactam production in Escherichia coli harboring the non-oxidative glycolysis. 日本生物工学会大会講演要旨集. 2023. 75th
森聖也, 二井手哲平, 戸谷吉博, 清水浩. Estimation and transformation of substrate specificity determining residues of metabolic enzymes using machine learning. 日本生物工学会大会講演要旨集. 2023. 75th