Rchr
J-GLOBAL ID：201801016009038312   Update date: Jun. 17, 2024

Kosaka Tomoyuki

コウサカ トモユキ | Kosaka Tomoyuki
Affiliation and department：
Yamaguchi University Department of Biological Chemistry, College of Agriculture, Graduate School of Sciences and Technology for Innovation,

About Yamaguchi University Department of Biological Chemistry, College of Agriculture, Graduate School of Sciences and Technology for Innovation,


Job title： Associate Professor
Other affiliations (1)：
  • Yamaguchi University
Homepage URL  (2)： https://ds.cc.yamaguchi-u.ac.jp/~yulmf2022/ ,  https://ds.cc.yamaguchi-u.ac.jp/~yulmf2022/en/
Research field  (5)： Applied microbiology ,  Applied molecular and cellular biology ,  Molecular biology ,  Systems genomics ,  Environmental agriculture
Research keywords  (15)： Functions of Microorganisms ,  propionate oxidizing bacteria ,  methanogen ,  大腸菌 ,  prokaryote ,  metabolic mechanisms ,  genetic engineering ,  bioinformatics ,  robustness ,  thermotolerance ,  succinate oxidation ,  Formate ,  Hydrogen ,  aggregation ,  Systems biology
Research theme for competitive and other funds  (9)：
  • 2023 - 2027 酵素の細胞内局在性の改変と反応場の改変によって物質生産能を改善する「酵素反応場工学」の検証
  • 2024 - 2025 Comparison and analysis of expression data and simulation results in gene knockout strains
  • 2020 - 2025 Algorithms for metabolic network design for producing useful substances
  • 2021 - 2024 Search and functional analysis of maturation genes for syntrophic propionate oxidation using genomic information
  • 2016 - 2019 Survival strategy of a cell; intra- and inter-species interaction analysis by barcode tchnology in Escherichia coli
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Papers (49)：
  • Noppon Lertwattanasakul, Sornsiri Pattanakittivorakul, Sukanya Nitiyon, Minenosuke Matsutani, Akihiro Oguchi, Katsushi Hirata, Tomoyuki Kosaka, Savitree Limtong, Mamoru Yamada. Mutants with Enhanced Multi-Stress Tolerance of Kluyveromyces marxianus and Their Ability for Ethanol Fermentation. Fuels. 2023
  • Takeyuki Tamura, Ai Muto-fujita, Yukako Tohsato, Tomoyuki Kosaka. Gene Deletion Algorithms for Minimum Reaction Network Design by Mixed-Integer Linear Programming for Metabolite Production in Constraint-Based Models: gDel_minRN. Journal of Computational Biology. 2023. 30. 5. 553-568
  • Tomoyuki Kosaka, Yuka Tsushima, Yusuke Shiota, Takayuki Ishiguchi, Kazuo Matsushita, Minenosuke Matsutani, Mamoru Yamada. Membrane Potential-requiring Succinate Dehydrogenase Constitutes the Key to Propionate Oxidation and Is Unique to Syntrophic Propionate-oxidizing Bacteria. Microbes and Environments. 2023. 38. 2. ME22111-n/a
  • Yushi Takehara, Isamu Fijikawa, Akihiro Watanabe, Ayumi Yonemura, Tomoyuki Kosaka, Kosei Sakane, Kiyoshi Imada, Kazunori Sasaki, Hiroshi Kajihara, Shoji Sakai, et al. Molecular Analysis of MgO Nanoparticle-Induced Immunity against Fusarium Wilt in Tomato. International Journal of Molecular Sciences. 2023. 24. 3. 2941-2941
  • Takao Koeduka, Bunta Watanabe, Konomi Shirahama, Masaru Nakayasu, Shiro Suzuki, Takumi Furuta, Hideyuki Suzuki, Kenji Matsui, Tomoyuki Kosaka, Shin-ichi Ozaki. Biosynthesis of dillapiole/apiole in dill ( Anethum graveolens ): characterization of regioselective phenylpropene O -methyltransferase. The Plant Journal. 2022. 113. 3. 562-575
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MISC (35)：
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Patents (2)：
Books (5)：
  • Kluyveromyces marxianus as a Platform in Synthetic Biology for the Production of Useful Materials. In: Darvishi Harzevili, F. (eds) Synthetic Biology of Yeasts.
    2022 ISBN:9783030896805
  • Potential of thermotolerant ethanologenic yeasts isolated from ASEAN countries and their application for high temperature fermentation. In Fuel ethanol production from sugarcane (eds. Basso TP, Basso LC)
    IntechOpen, Croatia 2018
  • Survival Strategy of Escherichia coli in Stationary Phase. In Escherichia coli - recent advances on physiology, pathogenesis and biotechnological applications (ed. Samie A)
    InTech, Croatia 2017
  • Menaquinone as Well as Ubiquinone as a Crucial Component in the Escherichia coli Respiratory Chain. In Chemical Biology, (ed. Deniz Ekinci)
    Intech open access publisher, Croatia. 2012
  • Small non-coding RNAs and their involvement in regulation of various biological processes in Escherichia coli and other bacteria. In Y. Sadaiye, K. Matsumoto (eds.), Escherichia coli and Bacillus subtilis; the frontiers of molecular microbiology revisi
    Research Signpost, Canada. 2012
Lectures and oral presentations  (160)：
  • Research and application of procedure for heterologous formate transporter characterization of uptaking function in Escherichia coli
    (Japan Society for Bioscience, Biotechnology, and Agrochemistry 2024 Annual Meeting / 100th Anniversary Meeting 2024)
  • セリ科植物におけるフェニルプロペンの位選選択的メチル化反応制御機構に関する研究
    (日本農芸化学会 学会創立100周年記念 中四国支部 第67回 講演会(例会) 2024)
  • Examples of Artificial Intelligence (AI)-used collaborative research by microbiologist
    (The 7th Priority University Seminar for Cooperation in Thailand between Chulalongkorn University, Kasetsart University and Yamaguchi University 2024)
  • Genomic information analysis to extract and visualize sets of genes involved in target gene function
    (The 36th JSME & The 13th ASME @Hamamatsu2023 2023)
  • Analysis of FAD covalent binding mechanism of succinate dehydrogenases in Gram-positive bacteria by heterologous expression
    (The 36th JSME & The 13th ASME @Hamamatsu2023 2023)
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Education (2)：
  • 1998 - 2003 Graduate school of Kyushu University Faculty of Agriculture
  • 1994 - 1998 Kyushu University School of Agriculture
Professional career (1)：
  • Ph.D (Agriculture) (Kyushu University)
Work history (7)：
  • 2021/04 - 現在 Yamaguchi University Research Center for Thermotolerant Microbial Resources (RCTMR), Advanced Science and Innovation Research Center, Organization for Research Initiatives Associate Professor
  • 2019/07 - 現在 Yamaguchi university Graduate School of Sciences and Technology for Innovation, Yamaguchi University Associate professor
  • 2016/04 - 2019/06 Yamaguchi University Department of Biological Chemistry, Collage of Agriculture, Graduate School of Science and Technology for Innovation Assistant professor
  • 2010/02 - 2016/03 YAMAGUCHI UNIVERSITY Faculty of Agriculture Assistant Professor
  • 2006/10 - 2010/03 Japan Science and Technology Agency
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Association Membership(s) (3)：
Japanese Society of Microbial Ecology ,  Japan Society for Bioscience, Biotechnology, and Agrochemistry ,  The Society for Biotechnology, Japan
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