Rchr
J-GLOBAL ID:200901054853171620   Update date: Sep. 01, 2020

Okuda Shujiro

オクダ シュウジロウ | Okuda Shujiro
Affiliation and department:
Homepage URL  (2): https://bioinfo.med.niigata-u.ac.jphttps://bioinfo.med.niigata-u.ac.jp
Research field  (5): Biophysics ,  Ecology and environmental science ,  Genetics ,  Systems genomics ,  Genomics
Research keywords  (6): 環境ゲノミクス ,  データベース ,  バイオインフォマティクス ,  Environmental Genomics ,  Database ,  Bioinformatics
Research theme for competitive and other funds  (2):
  • 生命システムと環境の相互作用の理解
  • Toward understanding interaction between life and the environment
Papers (93):
  • Issaku Yamada, Masaaki Shiota, Daisuke Shinmachi, Tamiko Ono, Shinichiro Tsuchiya, Masae Hosoda, Akihiro Fujita, Nobuyuki P Aoki, Yu Watanabe, Noriaki Fujita, et al. The GlyCosmos Portal: a unified and comprehensive web resource for the glycosciences. Nature methods. 2020. 17. 7. 649-650
  • Michihiro Igarashi, Asami Kawasaki, Yuya Ishikawa, Atsuko Honda, Masayasu Okada, Shujiro Okuda. Phosphoproteomic and bioinformatic methods for analyzing signaling in vertebrate axon growth and regeneration. Journal of neuroscience methods. 2020. 339. 108723-108723
  • Rie Habuka, Yuta Aizawa, Ryohei Izumita, Hisanori Domon, Yutaka Terao, Hayato Takihara, Okuda Shujiro, Akihiko Saitoh. Innate Immune Responses in Serum and Cerebrospinal Fluid from Neonates and Infants Infected with Parechovirus-A3 or Enteroviruses. The Journal of infectious diseases. 2020
  • Ryo Tamura, Kosuke Yoshihara, Hirofumi Nakaoka, Nozomi Yachida, Manako Yamaguchi, Kazuaki Suda, Tatsuya Ishiguro, Koji Nishino, Hiroshi Ichikawa, Keiichi Homma, et al. XCL1 expression correlates with CD8-positive T cells infiltration and PD-L1 expression in squamous cell carcinoma arising from mature cystic teratoma of the ovary. Oncogene. 2020
  • Matsumoto A, Shimada Y, Nakano Mae, Oyanagi H, Tajima Y, Nakano Masato, Kameyama H, Hirose Y, Ichikawa H, Nagahashi M, et al. RNF43 mutation is associated with aggressive tumor biology along with BRAF V600E mutation in right-sided colorectal cancer. Oncology Reports. 2020
more...
MISC (70):
  • Issaku Yamada, Masaaki Shiota, Daisuke Shinmachi, Tamiko Ono, Shinichiro Tsuchiya, Masae Hosoda, Akihiro Fujita, Nobuyuki P. Aoki, Yu Watanabe, Noriaki Fujita, et al. The GlyCosmos Portal: a unified and comprehensive web resource for the glycosciences. NATURE METHODS. 2020. 17. 7. 649-650
  • 塩田正明, 土屋伸一郎, 小野多美子, 李宣明, KUOKA Thukaa, 三浦信明, 平木愛子, 山田一作, 新町大輔, 青木ポール信行, et al. 糖鎖関連生命情報を統合化するGlyCosmos Portalの構築. 日本分子生物学会年会プログラム・要旨集(Web). 2018. 41st. ROMBUNNO.1PW2-09-2 (WEB ONLY)
  • 五斗進, 守屋勇樹, 河野信, 奥田修二郎, 渡辺由, 松本雅記, 高見知代, 小林大樹, 山ノ内祥訓, 荒木令江, et al. jPOSTプロジェクトが提供するプロテオミクスデータとその解析ツール. 第41回日本分子生物学会. 2018
  • 守屋勇樹, 河野信, 奥田修二郎, 渡辺由, 松本雅記, 高見知代, 小林大樹, 山ノ内祥訓, 荒木令江, 吉沢明康, et al. プロテオーム統合データベースの機能深化. 第41回日本分子生物学会. 2018
  • 奥田修二郎, 渡辺由, 守屋勇樹, 河野信, 松本雅記, 高見知代, 小林大樹, 山ノ内祥訓, 荒木令江, 吉沢明康, et al. jPOST統合環境の開発. トーゴ-の日2018シンポジウム. 2018
more...
Lectures and oral presentations  (24):
  • Computational Methods for the Interpretation of Clinical Meta­Omics Data: from a ‘Bag of Genes’ to Ecosystem Networks and Clinical Markers.
    (International Human microbiome Congress 2011)
  • From Parts Lists to Ecosystem Networks: Development of a 2nd Generation Toolkit for Meta­Omics Analysis.
    (Human Microbiome Research Conference 2010)
  • From Parts Lists to Ecosystem Networks: Development of a 2nd Generation Toolkit for Meta­Omics Analysis.
    (Human Microbiome Research Conference 2010)
  • iPath: Interactive Pathways Explorer.
    (ECCB 2010 2010)
  • Network analysis of adverse drug interactions.
    (IBSB 2008 2008)
more...
Education (5):
  • 2001 - 2006 Kyoto University
  • - 2006 Kyoto University
  • - 2003 Kyoto University
  • 1997 - 2001 Ritsumeikan University
  • - 2001 Ritsumeikan University
Work history (1):
  • Ritsumeikan University College of Llife Science, Department of Bioinformatics, Institute of Science and Engineering College of Life Sciences Department of Bioinformatics Assistant Professor
Association Membership(s) (6):
日本バイオインフォマティクス学会 ,  日本分子生物学会 ,  日本微生物生態学会 ,  Japanese Society for Bioinformatics ,  Molecular Biology Society of Japan ,  The Japanese Society of Microbial Ecology
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