2019 - 2022 Elucidation of the interaction between human commensal bacterial flora and host genetic alterations in the digestive tract
2019 - 2022 経験による大脳抑制性ニューロンの形態形成と機能分化メカニズムの解析
2019 - 2022 The role of lipid mediator in the tumor immune microenvironment of breast cancer and its therapeutic application
2019 - 2022 Clinical significance of comprehensive genomic analysis in HER2 positive gastric cancer
2019 - 2022 Verification of microsatellite instability status evaluated by cancer gene panel testing and clinical significance in the drug treatment for gastric cancer
2019 - 2021 Challenges to the identification of neutrophil subsets involved in the development and remission of inflammation
2018 - 2021 Mechanisms of cancer metabolism and drug resistance regulated by S1P in triple negative breast cancer
2018 - 2021 Elucidation of oral-gut association based on Elucidation of oral-gut association based on multi-omics analyzes
2018 - 2021 High-dimensional data analysis platform realizing cancer genome medicine
2018 - 2021 The new classification of colorectal cancer focusing on differences of molecular mechanisms in TGF-b signal pathway
2017 - 2020 New classification of gastric cancer based on genome analysis for precision medicine
2017 - 2019 The pathological role of secreted protein in promoting fibrosis in non alcoholic steatohepatitis.
2017 - 2019 Establishment and development of metagenomics-based priodontitis diagnostic platform
2016 - 2019 Brown adipose tissue dysfunction promotes metabolic disorder in a failing heart.
2016 - 2019 Analysis of metabolic remodeling using metabolomics in cardiopulmonary vascular disease
2016 - 2019 Elucidation of Vascular Remodeling through the Senescence Signal in Aortic Diseases
2016 - 2018 Is the iPS marker "TRA-1-60" an indicator of cancer intractability against therapeutics?
2014 - 2018 Profiling of disease factors in human microbiome
2015 - 2017 Molecular mechanism analysis of dormant cells causing refractory nature of bacterial infections
2014 - 2017 Neural mechanisms of visual communications revealed with electrocorticography.
2013 - 2015 Sponge-metabolomics for the discovery of new bioactive natural products
2009 - 2010 Analysis for functional diversity of environmental genomes
2008 - 2009 ゲノムの多様性と環境との相互作用の解析
生命システムと環境の相互作用の理解
Toward understanding interaction between life and the environment
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Papers (174)：
Kotaro Takahashi, Nozomi Yachida, Ryo Tamura, Sosuke Adachi, Shuhei Kondo, Tatsuya Abé, Hajime Umezu, Hiromi Nyuzuki, Shujiro Okuda, Hirofumi Nakaoka, et al. Clonal origin and genomic diversity in Lynch syndrome-associated endometrial cancer with multiple synchronous tumors: Identification of the pathogenicity of MLH1 p.L582H. Genes, Chromosomes and Cancer. 2024. 63. 3
Hikaru Ozeki, Yoshifumi Shimada, Mae Nakano, Shuhei Kondo, Riuko Ohashi, Yamato Miwa, Daisuke Yamai, Akio Matsumoto, Kaoru Abe, Yosuke Tajima, et al. Mucin phenotype and genetic alterations in non-V600E BRAF-mutated colorectal cancer. Human Pathology. 2024
Dina Hesham, Jotaro On, Nouran Alshahaby, Nada Amer, Sameh Magdeldin, Masayasu Okada, Yoshihiro Tsukamoto, Tetsuya Hiraishi, Chihaya Imai, Shujiro Okuda, et al. Multi-omics analyses of choroid plexus carcinoma cell lines reveal potential targetable pathways and alterations. Journal of neuro-oncology. 2024. 166. 1. 27-38
Amina K Shaban, Gebremichal Gebretsadik, Mariko Hakamata, Hayato Takihara, Erina Inouchi, Akihito Nishiyama, Yuriko Ozeki, Yoshitaka Tateishi, Yukiko Nishiuchi, Takehiro Yamaguchi, et al. Mycobacterial DNA-binding protein 1 is critical for BCG survival in stressful environments and simultaneously regulates gene expression. Scientific reports. 2023. 13. 1. 14157-14157
Daisuke Yamai, Yoshifumi Shimada, Masato Nakano, Hikaru Ozeki, Akio Matsumoto, Kaoru Abe, Yosuke Tajima, Mae Nakano, Hiroshi Ichikawa, Jun Sakata, et al. Clinical significance of metastatic tumor deposit foci in rectal cancer in the lateral pelvic lymph node area. International journal of clinical oncology. 2023. 28. 10. 1388-1397
白澤秀斗, 西山知里, 平野里佳, 平野里佳, 小柳喬, 奥田修二郎, 高木宏樹, 栗原新. Identification of polyamine-related genes in the high polyamine-producing bacterium Staphylococcus epidermidis FB146 from fermented foods. 日本農芸化学会大会講演要旨集(Web). 2022. 2022
三浦信明, 石濱泰, 奥田修二郎, 奥田修二郎. Novel method for construction of a reference amino acid sequence database for metaproteome analysis. 日本分子生物学会年会プログラム・要旨集(Web). 2021. 44th
Computational Methods for the Interpretation of Clinical MetaOmics Data: from a ‘Bag of Genes’ to Ecosystem Networks and Clinical Markers.
(International Human microbiome Congress 2011)
From Parts Lists to Ecosystem Networks: Development of a 2nd Generation Toolkit for MetaOmics Analysis.
(Human Microbiome Research Conference 2010)
From Parts Lists to Ecosystem Networks: Development of a 2nd Generation Toolkit for MetaOmics Analysis.
(Human Microbiome Research Conference 2010)
1997 - 2001 Ritsumeikan University College of Science and Engineering
Work history (4)：
2021/04 - 現在 新潟大学医学部メディカルAIセンター 教授
2017/04 - 2021/03 新潟大学大学院医歯学総合研究科 准教授
2013/02 - 2017/03 新潟大学大学院医歯学総合研究科 テニュア・トラック准教授
2008/04 - 2013/01 Ritsumeikan University College of Llife Science, Department of Bioinformatics, Institute of Science and Engineering College of Life Sciences Department of Bioinformatics Assistant Professor
Association Membership(s) (5)：
Japanese Society for Bioinformatics
, Molecular Biology Society of Japan
, International society for computational biology
, Human proteome organization
, Japanese Proteomics Society
