Uchiyama Ikuo

ウチヤマイクオ | Uchiyama Ikuo

Affiliation and department：

Research field (1)： Biophysics

Research theme for competitive and other funds (21)：

2023 - 2026 Thousands of adaptive changes emerging from thousands of genomes within a species
2021 - 2026 Study on the accumulation algorithm of noxious red-tide algae in dioramic and panoramic environments.
2020 - 2023 実用モデル珪藻の光環境応答・適応機構の最適化
2018 - 2021 Why does the red tide of Heterocapsa kill only shellfish?
2017 - 2020 Comprehensive analysis of the role of horizontal gene transfer in prokaryotic genome evolution based on comparative genome analysis

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Papers (89)：

Kaisa Thorell, Zilia Y. Muñoz-Ramírez, Difei Wang, Santiago Sandoval-Motta, Rajiv Boscolo Agostini, Silvia Ghirotto, Roberto C. Torres, Judith Romero-Gallo, Uma Krishna, Richard M. Peek, et al. The Helicobacter pylori Genome Project: insights into H. pylori population structure from analysis of a worldwide collection of complete genomes. Nature Communications. 2023. 14. 1
Minoru Kumazawa, Hiroyo Nishide, Ryo Nagao, Natsuko Inoue-Kashino, Jian-Ren Shen, Takeshi Nakano, Ikuo Uchiyama, Yasuhiro Kashino, Kentaro Ifuku. Molecular phylogeny of fucoxanthin-chlorophyll a / c proteins from Chaetoceros gracilis and Lhcq/Lhcf diversity. Physiologia Plantarum. 2022. 174. 1
Okubo, T., Toyoda, A., Fukuhara, K., Uchiyama, I., Harigaya, Y., Kuroiwa, M., Suzuki, T., Murakami, Y., Suwa, Y., Takami, H. The physiological potential of anammox bacteria as revealed by their core genome structure. DNA Research. 2021. 28. 1
Linard, B., Ebersberger, I., McGlynn, S.E., Glover, N., Mochizuki, T., Patricio, M., Lecompte, O., Nevers, Y., Thomas, P.D., Gabaldón, T., et al. Ten Years of Collaborative Progress in the Quest for Orthologs. Molecular Biology and Evolution. 2021. 38. 8. 3033-3045
Midori Iida, Miyuki Suzuki, Yuto Sakane, Hiroyo Nishide, Ikuo Uchiyama, Takashi Yamamoto, Ken-Ichi T Suzuki, Satoshi Fujii. A simple and practical workflow for genotyping of CRISPR-Cas9-based knockout phenotypes using multiplexed amplicon sequencing. Genes to cells : devoted to molecular & cellular mechanisms. 2020. 25. 7. 498-509

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MISC (59)：

森宙史, 藤澤貴智, 東光一, 中村保一, 山田拓司, 松井求, 内山郁夫. 微生物バイオインフォマティクスの最前線マイクロバイオーム研究を先導するハブを目指したMicrobiome Datahubの開発. 日本細菌学雑誌. 2023. 78. 1. 30-30
森宙史, 藤澤貴智, 東光一, 中村保一, 山田拓司, 松井求, 内山郁夫. Development of an integrated microbiome database: Microbiome Datahub. 日本細菌学雑誌(Web). 2023. 78. 1
藤澤貴智, 平川英樹, 守屋勇樹, 信定知江, 金谷重彦, 有田正規, 田畑哲之, 磯部祥子, 東光一, 中村保一, et al. MicrobeDB.jpからMicrobiome Datahubへ: 微生物・植物・メタボロームのデータ統合と統合微生物データベースの再構築. トーゴーの日2022. 2022. 1
森宙史, 藤澤貴智, 西出浩世, 矢口貴志, 高橋弘喜, 中川善一, 山田拓司, 内山郁夫, 中村保一, 黒川顕. 微生物統合データベースMicrobeDB.jpを用いたマイクロバイオーム研究への応用. 日本ゲノム微生物学会年会要旨集. 2022. 16th (Web)
森宙史, 藤澤貴智, 西出浩世, 矢口貴志, 高橋弘喜, 中川善一, 山田拓司, 内山郁夫, 中村保一, 黒川顕. 微生物統合データベースMicrobeDB.jpと微生物群集解析. トーゴーの日2021. 2021. 1

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Books (1)：

A library of signature pentapeptides for the Protein Data Bank(共著)
Protein structure by distance analysis, IOS Press 1994

Professional career (1)：

博士(科学) (東京大学)

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