Research field (3)：
Biological, health, and medical informatics
, Computational science
, Biophysics
Papers (35)：
Chioko Nagao, Hiroko Okuda, Gert-Jan Bekker, Atsuko Noguchi, Tsutomu Takahashi, Akio Koizumi, Shohab Youssefian, Tohru Tezuka, Shinji Akioka. Familial Episodic Pain Syndrome: A Japanese Family Harboring the Novel Variant c.2431C>T (p.Leu811Phe) in SCN11A. Biochemical Genetics. 2024
Gert-Jan Bekker, Kanji Oshima, Mitsugu Araki, Yasushi Okuno, Narutoshi Kamiya. Binding Mechanism between Platelet Glycoprotein and Cyclic Peptide Elucidated by McMD-Based Dynamic Docking. Journal of Chemical Information and Modeling. 2024. 64. 10. 4158-4167
Gert-Jan Bekker, Yoshifumi Fukunishi, Junichi Higo, Narutoshi Kamiya. Binding Mechanism of Riboswitch to Natural Ligand Elucidated by McMD-Based Dynamic Docking Simulations. ACS Omega. 2024
Ryo Kanada, Atsushi Tokuhisa, Yusuke Nagasaka, Shingo Okuno, Koichiro Amemiya, Shuntaro Chiba, Gert-Jan Bekker, Narutoshi Kamiya, Koichiro Kato, Yasushi Okuno. Enhanced Coarse-Grained Molecular Dynamics Simulation with a Smoothed Hybrid Potential Using a Neural Network Model. Journal of Chemical Theory and Computation. 2024
Gert-Jan Bekker, Nobutaka Numoto, Maki Kawasaki, Takahiro Hayashi, Saaya Yabuno, Yuko Kozono, Takeyuki Shimizu, Haruo Kozono, Nobutoshi Ito, Masayuki Oda, et al. Elucidation of binding mechanism, affinity and complex structure between mWT1 tumor-associated antigen peptide and HLA-A*24:02. Protein Science. 2023
三宅智哉, 西村和樹, 松田佳央理, 藤田純三, 藤田純三, 藤田純三, 難波啓一, 難波啓一, 徳山健斗, 戸谷吉博, et al. Structural and functional analysis of E. coli phosphoenolpyruvate carboxylase mutant. 日本分子生物学会年会プログラム・要旨集(Web). 2023. 46th
BEKKER Gert-Jan. PDBj tools and services for analyzing, editing and registering structural data. 日本蛋白質科学会年会プログラム・要旨集. 2021. 21st
BEKKER Gert-Jan. PDBj tools and services for analyzing and visualizing structural data. 生物物理(Web). 2021. 61. Supplement 1-2
横地政志, BEKKER Gert-Jan, 栗栖源嗣. Extension of wwPDB core archive with RDF graph data model. 日本分子生物学会年会プログラム・要旨集(Web). 2021. 44th
Narutoshi Kamiya, Gert-Jan Bekker. Flexible Docking between Enzyme and Its Inhibitor Using Multicanonical MD Simulations and Binding Free Energy Calculations. BIOPHYSICAL JOURNAL. 2020. 118. 3. 361A-361A
