Nishikawa Yohei

ニシカワヨウヘイ | Nishikawa Yohei

Affiliation and department：
Job title： Researcher
Other affiliations (1)：

Research field (1)： Applied microbiology

Research keywords (5)： Microfluidics , Phage , Environmental bacteria , Genome sequencing , Single cell

Research theme for competitive and other funds (10)：

2023 - 2026 Fate of antimicrobial resistance genes in wastewater treatment processes focusing on their carrier bacteria and viruses.
2023 - 2026 一細胞ドロップレット技術による難培養性抗酸菌/薬剤耐性菌のpathogenomics解析
2023 - 2025 Development of single-virus genomics method from small amounts of soil for functional analysis of rhizosphere viruses.
2022 - 2025 -
2020 - 2025 Construction of circulating production platform by environmental control based on Soil Microbe Atlas

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Papers (32)：

Yohei Nishikawa, Ryota Wagatsuma, Yuko Tsukada, Lin Chia-ling, Rieka Chijiiwa, Masahito Hosokawa, Haruko Takeyama. Large-scale single-virus genomics uncovers hidden diversity of river water viruses and diversified gene profiles. The ISME Journal. 2024
Masako Kifushi, Yohei Nishikawa, Masahito Hosokawa, Keigo Ide, Masato Kogawa, Toyoaki Anai, Haruko Takeyama. Analysis of microbial dynamics in the soybean root-associated environments from community to single-cell levels. Journal of Bioscience and Bioengineering. 2024
Kana Jitsuno, Tatsuhiko Hoshino, Yohei Nishikawa, Masato Kogawa, Katsuhiko Mineta, Michael Strasser, Ken Ikehara, Jeremy Everest, Lena Maeda, Fumio Inagaki, et al. Comparative single-cell genomics of Atribacterota JS1 in the Japan Trench hadal sedimentary biosphere. mSphere. 2024
Masahito Hosokawa, Yohei Nishikawa. Tools for microbial single-cell genomics for obtaining uncultured microbial genomes. Biophysical Reviews. 2023
Hiroshi Arai, Hisashi Anbutsu, Yohei Nishikawa, Masato Kogawa, Kazuo Ishii, Masahito Hosokawa, Shiou-Ruei Lin, Masatoshi Ueda, Madoka Nakai, Yasuhisa Kunimi, et al. Combined actions of bacteriophage-encoded genes in Wolbachia-induced male lethality. iScience. 2023. 26. 6. 106842-106842

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MISC (8)：

實野佳奈, 西川洋平, 星野辰彦, 稲垣史生, 稲垣史生, 稲垣史生, 竹山春子, 竹山春子, 竹山春子. 日本海溝に生息する超深海微生物群の遺伝的機能の解明. マリンバイオテクノロジー学会大会講演要旨集. 2023. 23rd
田中周平, 實野佳奈, 實野佳奈, 星野辰彦, 西川洋平, 西川洋平, 竹山春子, 竹山春子, 稲垣史生. Occurrence of Small Microplastics in Sediment Columnar Samples in the Japan Trench. 日本水環境学会シンポジウム講演集. 2023. 26th
星野仁彦, 吉田光範, 西川洋平, 鈴木仁人, 深野華子, 竹山春子, 鈴木敏彦. 微生物群集の構造と動態の理解シングルセルゲノミクスによる環境微生物相の分布調査(Understanding microbial community structures and dynamics A distribution survey of environmental microbiome by single-cell genomics). 日本細菌学雑誌. 2022. 77. 1. 17-17
實野佳奈, 實野佳奈, 西川洋平, 西川洋平, 小川雅人, 星野辰彦, 稲垣史生, 竹山春子, 竹山春子, 竹山春子, et al. Genomic analysis of bacterial diversity and function along the Japan Trench. 日本農芸化学会大会講演要旨集(Web). 2022. 2022
Challenges and prospects in single-cell genomics for uncultivable bacteria. 2017. 68. 2. 150-154

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Patents (3)：

Books (5)：

Lectures and oral presentations (49)：

Single-virus genomics of environmental DNA viruses reveals genomic micro-diversities
(UQ-Waseda University Joint Symposium 2024)
土壌微生物叢アトラスに基づいた環境制御による循環型協生農業プラットフォーム構築
(ムーンショット早稲田デー「わが国の破壊的イノベーションを先導するためには何をすべきか?」 2024)
Single-genome sequencing of environmental bacteria and phages to elucidate their functions
(2023)
Exploration and utilization of genetic resources for novel microbes and viruses
(BioJapan2023 2023)
Comprehensive Analysis of Phage Diversity in Suruga Bay, Japan, through droplet-based Single-Virus Genomics
(13th Asia Pacific Marine Biotechnology Conference (APMBC) 2023)

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Education (2)：

2014 - 2016 Waseda University Graduate School of Advanced Science and Engineering
2010 - 2014 Waseda University School of Advanced Science and Engineering

Professional career (1)：

Work history (4)：

2022/10 - 現在 National Institute of Advanced Industrial Science and Technology AIST-WASEDA CBBD-OIL
2021/04 - 現在 Waseda University Research Organization for Nano & Life Innovation
2019/04 - 2021/03 National Institute of Advanced Industrial Science and Technology AIST-Waseda University Comptational Bio Big-Data Open Innovation Laboratory
2016/04 - 2019/03 Japan Society for the Promotion of Science

Awards (2)：

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