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J-GLOBAL ID：202002261942610709   Reference number：20A2769061

Discovery of an Antibiotic-Related Small Protein of Biocontrol Strain Pseudomonas sp. Os17 by a Genome-Mining Strategy

ゲノムマイニング戦略による生物防除株Pseudomonas sp.Os17の抗生物質関連小蛋白質の発見【JST・京大機械翻訳】

Author (6)： Takeuchi Kasumi (Division of Plant and Microbial Sciences, Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, Tsukuba, Japan) ,  Tsuchiya Wataru (Structural Biology Team, Advanced Analysis Center, National Agriculture and Food Research Organization, Tsukuba, Japan) ,  Fujimoto Zui (Structural Biology Team, Advanced Analysis Center, National Agriculture and Food Research Organization, Tsukuba, Japan) ,  Yamada Kosumi (Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan) ,  Someya Nobutaka (Division of Vegetable Production System, Institute of Vegetable and Floriculture Science, National Agriculture and Food Research Organization, Tsukuba, Japan) ,  Yamazaki Toshimasa (Structural Biology Team, Advanced Analysis Center, National Agriculture and Food Research Organization, Tsukuba, Japan)
Material： Frontiers in Microbiology (Web)
Volume： 11  Page： 605705  Publication year： 2020 
JST Material Number： U7080A  ISSN： 1664-302X  Document type： Article
Article type： 原著論文  Country of issue： Switzerland (CHE)  Language： ENGLISH (EN)

Abstract/Point： Many root-colonizing Pseudomon...

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Thesaurus term： gene ,  *antibiotics ,  Rhizosphere ,  *Proteins ,  Mutation ,  *biological pest control ,  wild type ,  secondary metabolite ,  post-translational modification ,  colonisation ,  gene cluster ,  *genome mining ,  Nematoda ,  Insecta ,  *Pseudomonas ,  *antibacterial drug ,  *antimicrobial drug ,  *drug ,  invertebrate ,  Arthropoda ,  *microorganism
Semi thesaurus term： Nematoda ,  Insecta ,  *Pseudomonas , 【Automatic Indexing@JST】

Author keywords (6)： comparative genomics ,  root-colonizing pseudomonads ,  bacteriocin-like gene cluster ,  post-translational modification ,  Gac/Rsm signal transduction pathway ,  X-ray structural analysis

JST classification (3)： Enzyme in general  (EB09010D) ,  Gene expression  (EC02040Q) ,  Rice cropping  (FC03020C)

Reference (49)：

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• BibbyJ.KeeganR. M.MayansO.WinnM. D.RigdenD. J. (2012). AMPLE: a cluster-and-truncate approach to solve the crystal structures of small proteins using rapidly computed ab initio models. Acta Crystallogr. D Biol. Crystallogr. 68 1622-1631. doi: 10.1107/S0907444912039194 23151627
• BladergroenM. R.BadeltK.SpainkH. P. (2003). Infection-blocking genes of a symbiotic Rhizobium leguminosarum strain that are involved in temperature-dependent protein secretion. Mol. Plant Microbe Interact. 16 53-64. doi: 10.1094/MPMI.2003.16.1.53 12580282
• BlinK.MedemaM. H.KazempourD.FischbachM. A.BreitlingR.TakanoE. (2013). antiSMASH 2.0- a versatile platform for genome mining of secondary metabolite producers. Nucleic Acids Res. 41 W204-W212. doi: 10.1093/nar/gkt449 23737449
• BrodhagenM.HenkelsM. D.LoperJ. E. (2004). Positive autoregulation and signaling properties of pyoluteorin, an antibiotic produced by the biological control organism Pseudomonas fluorescens Pf-5. Appl. Environ. Microbiol. 70 1758-1766. doi: 10.1128/AEM.70.3.1758-1766.2004 15006802

Terms in the title (8)： ゲノムマイニング ,  戦略 ,  生物防除 ,  株 ,  Pseudomonas ,  抗生物質 ,  蛋白質 ,  発見