Naito Yuki

ナイトウユウキ | Naito Yuki

Affiliation and department：
Job title： Project Associate Professor
Homepage URL (1)： https://data.dbcls.jp/~meso/meme/

Research field (2)： Molecular biology , Genomics

Research keywords (5)： Nucleic Acids Therapeutics , Genome editing , Life Science Databases , microRNA , RNA interference

Research theme for competitive and other funds (9)：

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Papers (34)：

池田秀也, 千葉啓和, 藤原豊史, 五斗進, 井手隆広, 川島秀一, 箕輪真理, 三橋信孝, 守屋勇樹, 内藤雄樹, et al. TogoID: データベース統合の基盤となるID変換サービス. トーゴーの日2022. 2022. 1
Shuya Ikeda, Hiromasa Ono, Tazro Ohta, Hirokazu Chiba, Yuki Naito, Yuki Moriya, Shuichi Kawashima, Yasunori Yamamoto, Shinobu Okamoto, Susumu Goto, et al. TogoID: an exploratory ID converter to bridge biological datasets. Bioinformatics. 2022. In press
Tokuyuki Yoshida, Kunihiko Morihiro, Yuki Naito, Atsushi Mikami, Yuuya Kasahara, Takao Inoue, Satoshi Obika. Identification of nucleobase chemical modifications that reduce the hepatotoxicity of gapmer antisense oligonucleotides. Nucleic Acids Research. 2022. In press
Kazuaki Yamaguchi, Mitsutaka Kadota, Osamu Nishimura, Yuta Ohishi, Yuki Naito, Shigehiro Kuraku. Technical considerations in Hi-C scaffolding and evaluation of chromosome-scale genome assemblies. Molecular ecology. 2021. 30. 5923-5934
Kazuaki Yamaguchi, Mitsutaka Kadota, Osamu Nishimura, Yuta Ohishi, Yuki Naito, Shigehiro Kuraku. Practical guide for obtaining and validating chromosome-scale genome assemblies with Hi-C scaffolding. Authorea (preprint). 2021

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MISC (2)：

Patents (14)：

特異的塩基配列探索方法
(European Patent) Method of detecting target base sequence of rna interference, method of designing polynucleotide base sequence causing rna interference, method of constructing double-stranded polynucleotide, method of regulating gene expression, base sequence processing apparatus, program for running base sequence
RNA干渉ポリヌクレオチド混合物の設計装置、RNA干渉ポリヌクレオチド混合物の作製方法、及びRNA干渉ポリヌクレオチド混合物の設計プログラム
サンプルセット製造方法、遺伝子整列プログラム及びサンプルセット
(Australian Patent) Method for searching target base sequence of RNA interference, method for designing base sequence of polynucleotide for causing RNA interference, method for producing double-stranded polynucleotide, method for inhibiting gene expression, base sequence processing apparatus, program for running base sequence processing method on computer, recording medium, and base sequence processing system

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Books (13)：

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Works (9)：

Drug Search (Japanese)
Yuki Naito 2020 - 現在
CRISPRdirect: web-based software for designing CRISPR-Cas9 guide RNA with reduced off-target sites
Yuki Naito, Kimihiro Hino, Hidemasa Bono, Kumiko Ui-Tei 2014 - 現在
Probe Search
Yuki Naito 2013 - 現在
GGGenome: web-based, ultrafast search engines for nucleotide sequence database
Yuki Naito, Hidemasa Bono 2012 - 現在
GGRNA: Google-like full text search engine for genes and transcripts
Yuki Naito, Hidemasa Bono 2011 - 現在

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Education (2)：

2002 - 2007 The University of Tokyo Graduate School of Science Ph.D., Department of Biophysics and Biochemistry
1998 - 2002 The University of Tokyo Faculty of Science B.Sc., Department of Biophysics and Biochemistry

Professional career (1)：

Work history (4)：

2023/04 - 現在 Tokyo Medical and Dental University Graduate School of Medical and Dental Sciences Project Associate Professor
2023/04 - 現在 Database Center for Life Science (DBCLS) Visiting Associate Professor
2011/04 - 2023/03 Database Center for Life Science (DBCLS) Project Assistant Professor
2007/04 - 2011/03 Department of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo Assistant Professor

Association Membership(s) (2)：

Nucleic Acids Therapeutics Society of Japan , The Molecular Biology Society of Japan

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