Rchr
J-GLOBAL ID：200901016862445882
Update date: Sep. 19, 2024
Takahashi Takuya
タカハシ タクヤ | Takahashi Takuya
Affiliation and department：
Job title：
Professor
Other affiliations (1)：
Research field (2)：
Biophysics
, Structural biochemistry
Research keywords (1)：
Structural biology, biophysics, molecular science, computer science
Research theme for competitive and other funds (12)：
- 2013 - 2017 Optimization of the protein structure for synthesis of single crystal nanoparticles
- 2013 - 2016 Effects of mitochondrial crowding on their activites
- 2008 - 2014 Organizing study of ATP energy research project
- 2008 - 2012 Development of computational method of solvation dynaics and the application to ATP hydrolysys
- 2006 - 2007 誘電及び蛍光分光法による荷電高分子・アクチン周りのハイパーモバイル水動態解析
- 2001 - 2005 生命1次情報の高速収集とそれに基づく統合バイオサイエンスの展開
- 1999 - 2000 蛋白質におけるイオン溶媒和効果の熱力学的計算手法の開発
- 1997 - 1998 蛋白質の安定性と相互作用に与えるイオン.溶媒和効果の熱力学的計算手法の開発
- 1996 - 1997 Structure-Function Analysis of One single Ferritin Molecule with Electron Microscopy
- 1996 - 1996 プロテオリポソームを素構造とした結晶化薄膜の作製
- 1995 - 1995 蛋白質の溶解度の表面電荷分布と溶液条件が決める研究
- 1995 - 1995 プロテオリポソームを素構造とした結晶化薄膜の作製
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Papers (31)：
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Kota Kasahara, Yuki Takimoto, Ryoi Ashida, Takuya Takahashi. Effects of ion-water Lennard-Jones potentials on the hydration dynamics around a monovalent atomic ion in molecular dynamics simulations. Molecular Simulation. 2019. 45. 19. 1572-
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Takuya Shimato, Kota Kasahara, Junichi Higo, Takuya Takahashi. Effects of number of parallel runs and frequency of bias-strength replacement in generalized ensemble molecular dynamics simulations. Peer J. Phys. Chem. 2019. 1:e4
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Kota Kasahara, HirokiTerazawa, Takuya Takahashi, Junichi Higo. Studies on Molecular Dynamics of Intrinsically Disordered Proteins and Their Fuzzy Complexes: A Mini-Review. Computational and Structural Biotechnology Journal. 2019. 17. 712-720
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Ryosuke Iwai, Kota Kasahara, Takuya Takahashi. Influence of various parameters in the replica-exchange molecular dynamics method: Number of replicas, replica-exchange frequency, and thermostat coupling time constant. Biophysics and Physicobiology. 2018. 15. 165-172-172
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Naoki Ogasawara, Kota Kasahara, Ryosuke Iwai, Takuya Takahashi. Unfolding of α-helical 20-residue polyglutamic acid analyzed by multiple runs of canonical molecular dynamics simulations. PeerJ. 2018. 2018. MAY. e4769
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MISC (4)：
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Nagai Tetsuro, Takahashi Takuya. 8aAQ-4 Improvement of replica-exchange molecular dynamics method. Meeting abstracts of the Physical Society of Japan. 2014. 69. 2. 201-201
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AS Dimitrov, T Takahashi, K Furusawa, K Nagayama. Two-dimensional patterns of magnetic particles at air-water or glass-water interfaces induced by an external magnetic field: Experimental observation and dependencies. JOURNAL OF PHYSICAL CHEMISTRY. 1996. 100. 8. 3163-3168
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T Takahashi, AS Dimitrov, K Nagayama. Two-dimensional patterns of magnetic particles at air-water or glass-water interfaces induced by an external magnetic field: Theory and simulation of the formation process. JOURNAL OF PHYSICAL CHEMISTRY. 1996. 100. 8. 3157-3162
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M IRISA, T TAKAHASHI, K NAGAYAMA, F HIRATA. SOLVATION FREE-ENERGIES OF NONPOLAR AND POLAR SOLUTES REPRODUCED BY A COMBINATION OF EXTENDED SCALED PARTICLE THEORY AND THE POISSON-BOLTZMANN EQUATION. MOLECULAR PHYSICS. 1995. 85. 6. 1227-1238
Books (4)：
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生命科学1 生物個体から分子へ
コロナ社 2012 ISBN:9784339067422
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Practical Estimation of TCR-pMHC Binding Free-Energy Based on the Dielectric Model and the Coarse-Grained Model
InTech - Open Access Company 2012
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"ライフサイエンスと保健衛生", 保健衛生と健康スポーツ科学
篠原出版新社 2006
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"イオンと水", 水と生命
永山國昭監修 共立出版 2000
Lectures and oral presentations (90)：
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アミロイドペプチドのオリゴマー形成に関する分子シミュレーション
(第4回 LLPS研究会 2019)
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バイオインフォマティックアプローチで迫るタンパク質配列の電荷分布とLLPSの関係性の解明
(第4回 LLPS研究会 2019)
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Analysis of structural and functional propensities for subsequences of proteins by using machine learning
(The 57th annual meeting of biophysical society of japan 2019)
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Influences of cholesterol on structural dynamics of membrane protein complexes studied by molecular dynamics simulations
(The 57th annual meeting of biophysical society of japan 2019)
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Molecular dynamics study for elucidation of recognition mechanism of intrinsically disordered proteins by transcription factor Med26
(The 57th annual meeting of biophysical society of japan 2019)
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Education (2)：
- - 1991 The University of Tokyo "Graduate School, Division of Science"
- - 1985 The University of Tokyo Faculty of Science Department of Physics
Professional career (1)：
- Ph.D. in Science (The University of Tokyo) (The University of Tokyo)
Work history (7)：
Committee career (2)：
- 2014/01 - 2016/01 Japan Society for the Promotion of Science Grants-in-Aid forScientific Research
- 2014/01 - 2016/01 日本学術振興会 科学研究費助成事業 第1段審査(書面審査)委員 平成27年度
Association Membership(s) (2)：
Protein Science Society of Japan
, The Biophysical Society of Japan
