Rchr
J-GLOBAL ID:200901044232295363
Update date: Nov. 20, 2024 Sakumura Yuichi
サクムラ ユウイチ | Sakumura Yuichi
Affiliation and department: Homepage URL (1): https://ncb.naist.jp Research field (5):
Biophysics
, Biological, health, and medical informatics
, Soft computing
, Systems genomics
, Neuroscience - general
Research keywords (28):
システム生物学
, 統計解析
, 形態形成
, シグナル伝達
, 分子生物学
, システム同定
, 軸索誘導
, 生物形態
, 膜電位
, ベイズ推定
, 細胞形態
, 数理生物
, 発生
, 分節化
, 生物時計
, 神経成長
, 軸索伸長
, Notch シグナル
, シミュレーション
, 体節
, 分子時空間計測
, Rhoファミリー低分子量Gタンパク質
, 細胞運動
, 推論問題
, 非線型力学
, システム神経生物学
, Protein Interaction Nonlinear Dynamics
, Brain Information
Research theme for competitive and other funds (22): - 2023 - 2025 Elucidating the mechanism of angiogenesis through a quantitative model of cell movement
- 2021 - 2024 Comprehensive study on the effects of periodontal pathogen on the pathophysiology of atrial fibrillation
- 2020 - 2023 呼気成分による複数疾病のAI診断と生物学的基盤に関する研究
- 2018 - 2020 細胞の社会的ふるまいを軸とした発生過程のロバストな器官サイズ決定機構の新展開
- 2017 - 2019 体節細胞の速い同調を構成する細胞モデルと検証
- 2017 - 2019 呼気ガスセンシングによる病状診断と予測アルゴリズム開発
- 2014 - 2017 The system for fine tuning of signal transduction that maintains the robustness in morphogenesis
- 2013 - 2016 Extension of nonparametric Bayesian methods to semiparametric models and its applications
- 2010 - 2015 Development of system identification methods of mesoscopic neurocircuitry based on multi-dimensional imaging data
- 2013 - 2015 細胞移動における力分布・変形・前後極性の関係解明
- 2012 - 2014 Alteration of the level of Notch signaling activity in mouse embryo by gene duplication of Notch
- 2011 - 2014 Slow axonal transport driven by directional actin turnover
- 2013 - 2014 細胞形態形成のための多元的情報伝達の統合技術開発
- 2011 - 2012 神経配線のロジック解明と多元的階層構造の解析技術の開発
- 2010 - 2012 The mechanism of the molecular clock that controls developmental dynamics
- 2010 - 2012 神経形態の定量数理モデル
- 2008 - 2009 細胞形状変化と分子活性の因果関係の解明
- 2007 - 2009 生物形態の自律的な対称性破壊のメカニズム
- 2006 - 2007 細胞の形状変化と分子シグナルとの多次元相互作用に関する研究
- 2005 - 2005 分子シグナルから細胞運動への統合的システム生物学に関する研究
- 2004 - 2004 Gタンパク相互作用によって制御される軸索誘導の動作機構
- 1999 - 2000 Studies on Inferring Type Dependencies for Semi-structured Data
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Papers (49): -
Tomoki Ohkubo, Yuichi Sakumura, Fuzhong Zhang, Katsuyuki Kunida. A hybrid in silico/in-cell controller that handles process-model mismatches using intracellular biosensing. Scientific Reports. 2024. 14. 1
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Chen Xing, Yuichi Sakumura, Toshiya Kokaji, Katsuyuki Kunida, Noriaki Sasai. Stepwise Bayesian Machine Learning Uncovers a Novel Gene Regulatory Network Component in Neural Tube Development. 2024
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Kio Yagami, Kentarou Baba, Takunori Minegishi, Shinji Misu, Hiroko Katsuno-Kambe, Kazunori Okano, Yuichi Sakumura, Yoichiroh Hosokawa, Naoyuki Inagaki. Cell morphogenesis via self-propelled treadmilling actin waves. 2024
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Tomoki Ohkubo, Yuichi Sakumura, Katsuyuki Kunida. On-Line Reoptimization of Mammalian Fed-Batch Culture Using a Nonlinear Model Predictive Controller. New Generation Computing. 2023
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Ryosuke Fujikawa, Chika Okimura, Satoshi Kozawa, Kazushi Ikeda, Naoyuki Inagaki, Yoshiaki Iwadate, Yuichi Sakumura. Bayesian traction force estimation using cell boundary-dependent force priors. Biophysical Journal. 2023
more... MISC (34): -
Tomoki Ohkubo, Yuichi Sakumura, Fuzhong Zhang, Katsuyuki Kunida. Designing a hybrid in silico/in-cell controller robust to process-model mismatch associated with dynamically regulated enzyme overexpression. bioRxiv. 2024
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Tomoki Ohkubo, Yuichi Sakumura, Katsuyuki Kunida. On-line reoptimization of mammalian fed-batch culture using a nonlinear model predictive controller. bioRxiv. 2022
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矢神希生, 馬場健太郎, 岡野和宣, 細川陽一郎, 作村諭一, 稲垣直之. Observation of actin filament accumulation process in cell protrusions via actin waves. 日本細胞生物学会大会(Web). 2021. 73rd
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Ryosuke Fujikawa, Satoshi Kozawa, Kentarou Baba, Naoyuki Inagaki, Kazushi Ikeda, Yuichi Sakumura. Bayesian Cell Force Estimation Introducing Cell Shape Prior. BIOPHYSICAL JOURNAL. 2020. 118. 3. 459A-459A
- 稲垣直之, 勝野弘子, 鳥山道則, 細川陽一郎, 水野健作, 池田和司, 作村諭一. 新たな細胞内分子輸送機構Actin Waveと細胞形態形成. 日本細胞生物学会大会(Web). 2017. 69th. ROMBUNNO.S4-06 (WEB ONLY)
more... Books (5): - 半導体式ガスセンサによる呼気分析と統計解析
電気化学 2018
- Quantitative Modeling of Neuronal Polarization
2012
- 神経細胞が突起の長さを検知する仕組みと神経細胞の対称性の破れ
エヌ・ティー・エス 2011
- 細胞形態変化の定量と現象論的モデル
秀潤社 2010
- 神経の可塑性と発達の生体反応モデリング
羊土社 2007
Lectures and oral presentations (74): -
Feature Selection using Distance from Classification Boundary and Monte Carlo Simulation
(The 25th International Conference on Neural Information Processing (ICONIP 2018) 2018)
-
Stochasticity Promotes Synchronized Gene Expression between Cells in Somite Segmentation
(2017)
-
細胞性粘菌の運動の数理モデル
(バイオメカニクス研究会 2015)
-
軸索伸長の抑制因子と因子阻害剤の浸透率の推定
(電子情報通信学会技術研究報告 2015)
-
神経細胞の形態形成モデル
(立命館大学視覚科学統合研究センターシンポジウム 2014)
more... Education (3): - 1996 - 1999 The University of Tokyo Graduate School of Engineering
- 1994 - 1996 The University of Tokyo Graduate School of Engineering
- 1990 - 1994 Tokyo Institute of Technology School of Science Department of Physics
Professional career (1): - Doctor(Engineering) (The University of Tokyo)
Work history (8): - 2021/04 - 現在 Nara Institute of Science and Technology Data Science Center Professor
- 2018/04 - 2021/03 Nara Institute of Science and Technology Graduate School of Science and Technology Associate Professor
- 2017/04 - 2018/03 Nara Institute of Science and Technology Graduate School of Biological Sciences Associate Professor
- 2012/04 - 2017/03 Aichi Prefectural University School of Information Science and Technology Associate Professor
- 2011/04 - 2012/03 Nara Institute of Science and Technology Graduate School of Biological Sciences Associate Professor
- 2004/04 - 2011/03 Nara Institute of Science and Technology Graduate School of Information Science Associate Professor
- 2000/04 - 2004/03 Nara Institute of Science and Technology Graduate School of Information Science Assistant Professor
- 1999/04 - 2000/03 The University of Tokyo Graduate School of Frontier Sciences Research Associate
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Committee career (4): - 2015/04 - 現在 Journal of the Physical Society of Japan 編集委員
- - 現在 電子情報通信学会 編集委員
- 2008/04 - 2012/03 日本神経回路学会 理事
- 2008/04 - 2011/03 日本神経科学学会 神経科学ニュース編集委員
Association Membership(s) (7):
Asia Pacific Neural Network Society
, 北米神経科学学会
, 電子情報通信学会ソサイエティ論文誌 編集委員会
, Biophysical Society
, THE PHYSICAL SOCIETY OF JAPAN
, THE BIOPHYSICAL SOCIETY OF JAPAN
, 日本神経科学学会
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