Re Suyong

リスヨン | Re Suyong

Affiliation and department：
Homepage URL (1)： https://mizuguchilab.org

Research field (3)： Basic physical chemistry , Biophysics , Biological, health, and medical informatics

Research keywords (1)：分子認識、タンパク質、糖鎖、創薬、分子動力学計算

Research theme for competitive and other funds (17)：

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Papers (71)：

Piotr Chyży, Marta Kulik, Ai Shinobu, Suyong Re, Yuji Sugita, Joanna Trylska. Molecular dynamics in multidimensional space explains how mutations affect the association path of neomycin to a riboswitch. Proceedings of the National Academy of Sciences. 2024. 121. 15
Yulong Gou, Suyong Re, Kenji Mizuguchi, Chioko Nagao. Impact of Hydrogen Bonding on P-Glycoprotein Efflux Transport as Revealed by Evaluation of a De Novo Prediction Model. ACS Medicinal Chemistry Letters. 2023
Yosui Nojima, Masahiko Aoki, Suyong Re, Hidekazu Hirano, Yuichi Abe, Ryohei Narumi, Satoshi Muraoka, Hirokazu Shoji, Kazufumi Honda, Takeshi Tomonaga, et al. Integration of pharmacoproteomic and computational approaches reveals the cellular signal transduction pathways affected by apatinib in gastric cancer cell lines. Computational and Structural Biotechnology Journal. 2023. 21. 2172-2187
Yoshinobu Igarashi, Suyong Re, Ryosuke Kojima, Yasushi Okuno, Hiroshi Yamada. Development of a GCN-based model to predict <i>in vitro</i> phototoxicity from the chemical structure and HOMO-LUMO gap. The Journal of Toxicological Sciences. 2023. 48. 5. 243-249
Yuhi Hosoe, Yohei Miyanoiri, Suyong Re, Saki Ochi, Yuya Asahina, Toru Kawakami, Masataka Kuroda, Kenji Mizuguchi, Masayuki Oda. Structural dynamics of the N-terminal SH2 domain of PI3K in its free and CD28-bound states. The FEBS Journal. 2022. 290. 9. 2366-2378

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MISC (29)：

森脇由隆, 大上雅史, 岡野原大輔, 田口英樹, 白水美香子, 新津藍, 李秀栄, 神谷由紀子. 緊急特集 AlphaFold3:その正体を探る. 現代化学. 2024. 640. 17-22
李秀栄. 「連結シミュレーション」による分子標的薬「イマチニブ」のタンパク質結合経路の予測. CBI学会誌. 2023. 11. 3. 3-4
Suyong Re. Molecular dynamics simulation of glycans. GlycoWord. 2023
Hisham M. Dokainish, Suyong Re, Takaharu Mori, Chigusa Kobayashi, Jaewoon Jung, Yuji Sugita. Unraveling SARS-CoV-2 spike protein activation pathway reveals unprecedented cryptic pockets. BIOPHYSICAL JOURNAL. 2022. 121. 3. 457A-457A
李秀栄, DOKAINISH Hisham M, 森貴治, 小林千草, JUNG Jaewoon, 杉田有治. 「富岳」を用いた SARS-CoV-2 受容体結合ドメインの動的構造解析. アンサンブル. 2022. 24. 1. 7-14

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Books (2)：

創薬研究のための相互作用解析パーフェクト : 低中分子・抗体創薬におけるスクリーニング戦略と実例、in silico解析、一歩進んだ分析技術まで
羊土社 2021 ISBN:9784758122566
Replica Exchange Methods for Biomolecular Simulation. In: Bonomi M., Camilloni C. (eds) Biomolecular Simulations. Methods in Molecular Biology
Humana Press, New York, NY 2019 ISBN:9781493996070

Lectures and oral presentations (63)：

Impact of glycan shielding on antibody epitopes on viral envelope proteins revealed by molecular dynamics simulations
(21st IUPAB and 62nd BSJ Joint Congress 2024 (IUPAB2024) 2024)
ペプチド阻害剤設計における動的構造の影響
(日本化学会第104春季年会 2024)
Substrate binding-coupled conformational dynamics of PI3K SH2 domain revealed by gREST simulation
(2023)
拡張アンサンブル法を用いたSH2タンパク質ドメインの動的構造解析
(2023)
In-silico design of peptide inhibitors containing unnatural amino acid
(2023)

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Education (5)：

1997 - 2001 Rikkyo University
1998 - 1999 Emory University Department of Chemistry Visiting Student
1997 - 1998 The University of Georgia Center for Computational Quantum Chemistry Visiting Student
1995 - 1997 Rikkyo University Graduate School of Science Department of Chemistry
1990 - 1994 Kore University (Japan) Faculty of Science Department of Chemistry

Professional career (1)：

Work history (13)：

2024/04 - 現在 National Institutes of Biomedical Innovation, Health and Nutrition Artificial Intelligence Center for Health and Biomedical Research Laboratory of in-silico design, Project Leader
2022/04 - 2024/03 National Institutes of Biomedical Innovation, Health and Nutrition Artificial Intelligence Center for Health and Biomedical Research Senior Researcher
2021/04 - 2022/03 National Institutes of Biomedical Innovation, Health and Nutrition Artificial Intelligence Center for Health and Biomedical Research Project researcher
2020/06 - 2021/03 National Institutes of Biomedical Innovation, Health and Nutrition Center for Drug Design Research project research scientist
2018/04 - 2020/05 RIKEN Center for Biosystems Dynamics Research Senior Scientist

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Awards (4)：

2024/02 - 内閣府第6回日本オープンイノベーション大賞文部科学大臣賞分子動力学ソフトウェアGENESISの開発と社会実装
2015/07 - Research Organization for Information Science and Technology (RIST) HPCI excellent achievement award
2003/05 - 文部科学省所管公益法人財団法人金萬有科学振興会第 20 回研究奨励賞受賞弱い分子間相互作用に関する理論的研究
2001/05 - 文部科学省所管公益法人財団法人金萬有科学振興会第 18 回研究奨励賞受賞水和クラスター内酸解離反応に関する理論的研究

Association Membership(s) (4)：

THE JAPANESE SOCIETY OF CARBOHYDRATE RESEARCH , THE BIOPHYSICAL SOCIETY OF JAPAN , THE CHEMICAL SOCIETY OF JAPAN , 情報計算化学生物学会(CBI学会)

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