Jiro Kondo

コンドウジロウ | Jiro Kondo

Affiliation and department：
Job title： Professor
Homepage URL (1)： https://jkondo.wixsite.com/sophia-biophysics

Research field (3)： Pharmaceuticals - analytical and physicochemistry , Biophysics , Structural biochemistry

Research keywords (5)： X-Ray crystallography , Drug resistance , Antibiotics , 生体機能応用デバイス , 物理系薬学

Research theme for competitive and other funds (30)：

2022 - 2027 RNAターゲット創薬のためのRNA分子設計・共結晶化・試料調製支援と高度化
2021 - 2025 Nucleic Acid-Metal Complexes: Preparation, structure analysis, characterization of metal-DNA wires and metal nanocluster-DNA complexes.
2021 - 2023 多彩な蛍光色を呈するDNA-銀ナノクラスターのX線結晶解析
2020 - 2023 放射光X線結晶解析とクライオ電子顕微鏡を融合した構造生物模倣科学の開拓
2020 - 2022 リボソームRNAを模倣した一塩基多型センサーのStructure-Based Design

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Papers (106)：

近藤次郎. RNAターゲット創薬とRNA創薬のための立体構造解析戦略. 実験医学増刊号. 2024. 42. 2
Vanessa Rück, Vlad A. Neacșu, Mikkel B. Liisberg, Christian B. Mollerup, Park Hee Ju, Tom Vosch, Jiro Kondo, Cecilia Cerretani. Atomic Structure of a DNA-Stabilized Ag₁₁ Nanocluster with Four Valence Electrons. Advanced Optical Materials. 2023. in press
Anna Gonzàlez-Rosell, Sami Malola, Rweetuparna Guha, Nery R. Arevalos, María Francisca Matus, Meghen E. Goule, Esa Haapaniemi, Benjamin B. Katz, Tom Vosch, Jiro Kondo, et al. Chloride Ligands on DNA-Stabilized Silver Nanoclusters. Journal of the American Chemical Society. 2023
Hidetaka Torigoe, Jiro Kondo, Fumihiro Arakawa. Specific binding of Hg2+ to mismatched base pairs involving 5-hydroxyuracil in duplex DNA. Journal of Inorganic Biochemistry. 2023. 241. 112125-112125
Jiro Kondo, Shota Nakamura. BasePairPuzzle: Molecular Models for Manipulating the Concept of Hydrogen Bonds and Base Pairs in Nucleic Acids. Journal of Chemical Education. 2023. 100. 2. 946-954

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MISC (8)：

Jiro Kondo. Methods for Structure-based Design of Nucleic Acid Medicine. Bioindustry. 2018. 35. 3. 56-64
Structure-Based Design of DNA Nanomedicine. 2016. 67. 11. 828-836
Jiro Kondo. Structure-Based Design of DNA nanomedicine. Chemical Industry. 2016. 27. 11. 28-36
Jiro Kondo. Frontier of Nucleic Acids Structural Biology. SOPHIA SCI-TECH. 2016. 27. 2-7
Jiro Kondo. Understanding functions of non-coding RNAs by looking at their motions. Bulletin of The RNA Society of Japan. 2015. 32. 12-14

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Patents (4)：

金属イオン捕捉剤
蛍光標識核酸プローブ
特定の立体構造を誘導する人工核酸
DNA-金属ハイブリッドナノワイヤーおよびその製造方法

Books (10)：

核酸医薬ハンドブック
NTS 2024
生体高分子結晶のX線構造解析: -実践手法と基礎理論-
2022 ISBN:4621307061
Handbook of Nucleic Acids Science
講談社サイエンティフィク 2020
BasePairPuzzle
2019
Nucleic Acid Crystallography -Methods and Protocols (Methods in molecular biology (Clifton, N.J.), v. 1320.; Springer protocols (Series) ) "Crystallographic Studies of the Ribosomal A-Site Molecular Switches by Using Model RNA Oligomers"
Springer 2016 ISBN:9781493927623

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Lectures and oral presentations (134)：

BasePairPuzzle: Molecular models to understand the concept of base pairing
(ISNAC 2023 (The 50th International Symposium on Nucleic Acids Chemistry) 2023)
創薬標的としてのRNA立体構造モチーフ
(CBI学会2023年大会 2023)
RNAをターゲットとした創薬のための構造解析・分子デザイン技術
(第2回 BINDS公開講座 2023)
Design of model molecules for X-ray crystallography for RNA-targeted drug discovery
(IUCr 2023 (26th Congress and General Assembly of the International Union of Crystallography) 2023)
RNAターゲット創薬のための立体構造解析・医薬品デザインの技術
(2023)

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Education (3)：

2001 - 2004 Tokyo Institute of Technology Graduate School, Division of Life Science and Engineering
1999 - 2001 Tokyo Institute of Technology Graduate School, Division of Life Science and Engineering
1995 - 1999 Ritsumeikan University Faculty of Science and Engineering

Professional career (3)：

学士(工学) (立命館大学)
修士(理学) (東京工業大学)
博士(理学) (東京工業大学)

Work history (6)：

2023/04 - 現在 Sophia University Faculty of Science and Technology Department of Materials and Life Sciences Professor
2015/04 - 2023/03 Sophia University Faculty of Science and Technology Department of Materials and Life Sciences Associate Professor
2010/04 - 2015/03 Sophia University Faculty of Science and Technology Department of Materials and Life Sciences Assistant Professor
2009/01 - 2010/03 Universite de Strasbourg Postdoctoral fellow
2006/04 - 2008/12 Universite Louis Pasteur Postdoctoral fellow

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Awards (8)：

2023/11 - Japan Society of Kansei Engineering Kawaii Kansei Design Award BasePairPuzzle
2022/03 - Sophia University Attractive Lecture Award 2020
2020/03/31 - 田中貴金属記念財団 2019年度「貴金属に関わる研究助成金」奨励賞
2018/12/18 - 上智大学理工学部 Attractive Lecture Award 2018 生物物理学
2017/12/19 - 上智大学理工学部 Attractive Lecture Award 2017 基礎生物学

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Association Membership(s) (11)：

日本結晶学会 , The RNA Society , 日本RNA学会 , 日本化学会 , 日本生化学会 , 日本薬学会 , 日本生物物理学会 , IS3NA (The International Society of Nucleosides, Nucleotides & Nucleic Acids) , 日本核酸医薬学会 , 日本核酸化学会 , ホスト-ゲスト・超分子化学研究会

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