Research field (1)：
Bio-, chemical, and soft-matter physics
Research theme for competitive and other funds (12)：
2023 - 2029 non-AUG translation: Understanding the mechanism of human disease etiology through "wobble" in start codon selection
2021 - 2025 Heat Transfer and Molecular Structure in the Crowded Environment of the Cell
2019 - 2021 Mechanistic Modeling of Crowds Led by Cells of Singularity
2018 - 2021 Mathematical modeling of mechanical transduction and interference between structured biomolecules
2018 - 2020 Polymer modeling for 3D chromosome structure with a deep learning and 4D simulation
2016 - 2019 Design principles of protein structures underlying allosteric regulation
2016 - 2018 Interactions within chromatin domains by a mathematical model of chromosomes with epigenetic information
2011 - 2016 Spying minority in biological phenomena -Toward bridging dynamics between individual and ensemble processes-
2010 - 2015 Spontaneous signal generation in motile cells and its physiological significance
2011 - 2015 Constructing a theoretical framework to study reaction networks involving a small number of molecules: modeling with consideration of minority and hierarchy
2008 - 2011 Reaction-diffusion modeling for intracellular environment
2003 - 2004 分子数の離散性が化学反応ネットワークに及ぼす効果
Show all
Papers (51)：
Radek Erban, Yuichi Togashi. Asymmetric Periodic Boundary Conditions for All-Atom Molecular Dynamics and Coarse-Grained Simulations of Nucleic Acids. Journal of Physical Chemistry B. 2023. 127. 38. 8257-8267
Takeru Kameda, Akinori Awazu, Yuichi Togashi. Molecular dynamics analysis of biomolecular systems including nucleic acids. Biophysics and Physicobiology. 2022. 19. e190027
Yoshihiko Fujita, Takeru Kameda, Chingakham Ranjit Singh, Whitney Pepper, Ariana Cecil, Madelyn Hilgers, Mackenzie Thornton, Izumi Asano, Carter Moravek, Yuichi Togashi, et al. Translational recoding by chemical modification of non-AUG start codon ribonucleotide bases. Science Advances. 2022. 8. 14. eabm8501
Yuichi Togashi. Multiscale Modeling of Chromatin Considering the State and Shape of Molecules. Lecture Notes in Mechanical Engineering. 2022. 171-175
Takeru Kameda, Katsura Asano, Yuichi Togashi. Free energy landscape of RNA binding dynamics in start codon recognition by eukaryotic ribosomal pre-initiation complex. PLoS Computational Biology. 2021. 17. 6. e1009068
Minorities and Small Numbers from Molecules to Organisms in Biology: Toward a New Understanding of Biological Phenomena
Springer Singapore 2018 ISBN:9789811320828
Spying Minority in Biological Phenomena
Nippon Hyoron sha 2017 ISBN:9784535788169
Engineering of Chemical Complexity
World Scientific Publishing 2013
BioNanoProcess - Introduction to Wet-Nanotechnology: in aqua Organization of Nano-Structures -
CMC Publishing 2008
Education (2)：
1998 - 2004 The University of Tokyo Graduate School of Arts and Sciences Basic Science
1994 - 1998 The University of Tokyo College of Arts and Sciences Basic Science
Professional career (2)：
Ph. D. (The University of Tokyo)
Master of Science (The University of Tokyo)
Work history (17)：
2021/04 - 現在 RIKEN Center for Biosystems Dynamics Research Senior Visiting Scientist
2021/04 - 現在 Ritsumeikan University College of Life Sciences, Department of Bioinformatics Professor
2011/04 - 2022/03 Osaka University Cybermedia Center Visiting Academic Staff
2019/04 - 2021/03 Hiroshima University Graduate School of Integrated Sciences for Life Associate Professor
2018/11 - 2021/03 RIKEN Center for Biosystems Dynamics Research Senior Scientist
2017/04 - 2019/03 Hiroshima University Graduate School of Science, Department of Mathematical and Life Sciences Associate Professor
2018/04 - 2018/10 RIKEN Center for Biosystems Dynamics Research Visiting Scientist
2011/04 - 2018/03 RIKEN RIKEN Quantitative Biology Center Visiting Scientist
2014/01 - 2017/03 Hiroshima University Graduate School of Science, Department of Mathematical and Life Sciences Associate Professor by Special Appointment
2011/04 - 2013/12 Kobe University Graduate School of System Informatics, Department of Computational Science Associate Professor
2010/10 - 2011/03 RIKEN Visiting Scientist
2009/09 - 2011/03 Osaka University Cybermedia Center Associate Professor (Lecturer)
2007/04 - 2009/08 Osaka University Graduate School of Frontier Biosciences Specially Appointed Assistant Professor
2005/04 - 2007/03 Japan Society for the Promotion of Science Overseas Research Fellow
2004/09 - 2007/03 Fritz Haber Institute of the Max Planck Society Visiting Scientist
2003/04 - 2005/03 Japan Society for the Promotion of Science Research Fellow
1999/08 - 2003/03 Tamon Co., Inc.
Show all
Committee career (12)：
2024/01 - 現在 The Biophysical Society of Japan Editorial Board Member of "Biophysics and Physicobiology"
2024/01 - 現在 The Biophysical Society of Japan Vice editor-in-chief of "Seibutsu Butsuri" journal
2023/06 - 現在 日本生物物理学会 代議員
2022/06 - 2024/06 Japanese Association for the Advancement of Science Director
2018/01 - 2019/12 The Biophysical Society of Japan Vice editor-in-chief of "Seibutsu Butsuri" journal
2017/06 - 2019/06 日本生物物理学会 平成29・30年度代議員
2016/01 - 2017/12 The Biophysical Society of Japan Editor of "Seibutsu Butsuri" journal
2014/10 - 2015/09 The Physical Society of Japan Division 12 Committee
Show all
Association Membership(s) (9)：
Japan Society for Research Policy and Innovation Management
, Japanese Association for the Advancement of Science
, The Institute of Systems, Control and Information Engineers
, Institute of Electrical and Electronics Engineers
, The Biophysical Society (U.S.)
, The Molecular Biology Society of Japan
, The Japanese Society for Artificial Intelligence
, The Biophysical Society of Japan
, The Physical Society of Japan
