Rchr
J-GLOBAL ID：201401099260536480
Update date: Mar. 06, 2024
Kanada Ryo
カナダ リョウ | Kanada Ryo
Affiliation and department：
Research field (1)：
Biophysics
Research theme for competitive and other funds (2)：
- 2019 - 2022 全原子モデルの併用と機械学習手法の適用による粗視化分子モデルの高精度化
- 2000 - 2002 分子モーターの理論モデル
Papers (31)：
-
Ryo Kanada, Atsushi Tokuhisa, Yusuke Nagasaka, Shingo Okuno, Koichiro Amemiya, Shuntaro Chiba, Gert-Jan Bekker, Narutoshi Kamiya, Koichiro Kato, Yasushi Okuno. Enhanced Coarse-Grained Molecular Dynamics Simulation with a Smoothed Hybrid Potential Using a Neural Network Model. Journal of chemical theory and computation. 2024. 20. 1. 7-17
-
Ryo Kanada, Atsushi Tokuhisa, Yusuke Nagasaka, Shingo Okuno, Koichiro Amemiya, Shuntaro Chiba, Gert Jan Bekker, Narutoshi Kamiya, Koichiro Kato, Yasushi Okuno. Enhanced Coarse-Grained Molecular Dynamics Simulation with a Smoothed Hybrid Potential Using a Neural Network Model. Journal of Chemical Theory and Computation. 2023
-
Takumi Washio, Xiaoke Cui, Ryo Kanada, Jun-ichi Okada, Seiryo Sugiura, Yasushi Okuno, Shoji Takada, Toshiaki Hisada. Using incomplete Cholesky factorization to increase the time step in molecular dynamics simulations. Journal of Computational and Applied Mathematics. 2022
-
Kenichiro Takaba, Chiduru Watanabe, Atsushi Tokuhisa, Yoshinobu Akinaga, Biao Ma, Ryo Kanada, Mitsugu Araki, Yasushi Okuno, Yusuke Kawashima, Hirotomo Moriwaki, et al. Protein-ligand binding affinity prediction of cyclin-dependent kinase-2 inhibitors by dynamically averaged fragment molecular orbital-based interaction energy. Journal of Computational Chemistry. 2022. 43. 20. 1362-1371
-
Ryo Kanada, Kei Terayama, Atsushi Tokuhisa, Shigeyuki Matsumoto, Yasushi Okuno. Enhanced Conformational Sampling with an Adaptive Coarse-Grained Elastic Network Model Using Short-Time All-Atom Molecular Dynamics. Journal of chemical theory and computation. 2022
ｍore...
MISC (9)：
-
Macoto Kikuchi, Ryo Kanada, Fumiko Takagi. Allosterically Regulated Structural Fluctuation and Microtubule-Binding Affinity of KiF1A-A Simulation Study of Coarse-Grained Model -. BIOPHYSICAL JOURNAL. 2016. 110. 3. 459A-459A
-
Kanada Ryo, Takada Shoji. 3P028 Interactions of MEK1 with ERK2 in mammalian MAPK pathway studied by coarse-grained molecular simulations(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014)). Seibutsu Butsuri. 2014. 54. 1. S253
-
Kanada Ryo, Takada Shoji. 2P047 Docking dynamics of MAP kinase : MEK1-ERK2 complex system studied by coarse-grained simulation(01B. Protein: Structure & Function,Poster). Seibutsu Butsuri. 2013. 53. 1. S166
-
Kanada Ryo, Makino Tsukasa, Tomishige Michio, Takada Shoji. 1PS037 The effect of the internal tension between two heads on the nucleotide binding site of kinesin-1 studied by All-atom MD(The 50th Annual Meeting of the Biophysical Society of Japan). Seibutsu Butsuri. 2012. 52. S80
-
Tsukasa Makino, Teppei Mori, Ryo Kanada, Ken-ichi Miyazono, Shoji Takada, Masaru Tanokura, Michio Tomishige. Structural Basis for the Coordinated Processive Movement of Kinesin-1 studied by Structural and Single Molecule Analyses. BIOPHYSICAL JOURNAL. 2011. 100. 3. 120-121
ｍore...
Books (1)：
-
in silico創薬におけるスクリーニングの高速化・高精度化技術
技術情報協会 2018 ISBN:9784861046889
Association Membership(s) (2)：
Return to Previous Page
