Sakuraba Shun

サクラバシュン | Sakuraba Shun

Affiliation and department：

Research field (2)： Bio-, chemical, and soft-matter physics , Basic physical chemistry

Research keywords (5)： Rational Protein Design , Free energy calculation , Structural Biology , Biomolecules , Molecular Dynamics

Research theme for competitive and other funds (8)：

2022 - 2027 Genomic dynamics underlying the plastic hermaphroditism in plants: the basis of exploratory reproductive adaptations
2022 - 2027 Molecular dynamic mechanism of the sexual selection core in the plant hermaphroditism
2021 - 2024 修飾塩基を持つRNAの情報解析基盤技術の開発
2020 - 2023 Distribution Matching Principle for Machine Learning Based Molecular Simulation
2020 - 2022 Quick sampling of protein large conformational changes

Show all

Papers (44)：

Junichi Higo, Kota Kasahara, Gert-Jan Bekker, Benson Ma, Shun Sakuraba, Shinji Iida, Narutoshi Kamiya, Ikuo Fukuda, Hidetoshi Kono, Yoshifumi Fukunishi, et al. Fly casting with ligand sliding and orientational selection supporting complex formation of a GPCR and a middle sized flexible molecule. Scientific Reports. 2022. 12. 1
Effi Haque, Aamir Salam Teeli, Dawid Winiarczyk, Masahiko Taguchi, Shun Sakuraba, Hidetoshi Kono, Paweł Leszczyński, Mariusz Pierzchała, Hiroaki Taniguchi. HNF1A POU Domain Mutations Found in Japanese Liver Cancer Patients Cause Downregulation of HNF4A Promoter Activity with Possible Disruption in Transcription Networks. Genes. 2022
Shun Sakuraba, Qilin Xie, Kota Kasahara, Junichi Iwakiri, Hidetoshi Kono. Extended ensemble simulations of a SARS-CoV-2 nsp1-5’-UTR complex. PLOS Computational Biology. 2022. 18. 1. e1009804-e1009804
Ko Sato, Amarjeet Kumar, Keisuke Hamada, Chikako Okada, Asako Oguni, Ayumi Machiyama, Shun Sakuraba, Tomohiro Nishizawa, Osamu Nureki, Hidetoshi Kono, et al. Structural basis of the regulation of the normal and oncogenic methylation of nucleosomal histone H3 Lys36 by NSD2. Nature communications. 2021. 12. 1. 6605-6605
Hideaki Ohtomo, Jun-ichi Kurita, Shun Sakuraba, Zhenhai Li, Yasuhiro Arimura, Masatoshi Wakamori, Yasuo Tsunaka, Takashi Umehara, Hitoshi Kurumizaka, Hidetoshi Kono, et al. The N-terminal Tails of Histones H2A and H2B Adopt Two Distinct Conformations in the Nucleosome with Contact and Reduced Contact to DNA. Journal of Molecular Biology. 2021. 433. 15. 167110-167110

ｍore...

MISC (2)：

Shun Sakuraba. Comment on “Replica-exchange-with-tunneling for fast exploration of protein landscapes” [J. Chem. Phys. 143, 224102 (2015)]. The Journal of Chemical Physics. 2016. 145. 5. 057101-057101
Sakuraba Shun, Kitao Akio. 21pTC-6 Efficient umbrella sampling method for biomolecules. Meeting abstracts of the Physical Society of Japan. 2007. 62. 1. 376-376

Education (3)：

2005 - 2010 The University of Tokyo Graduate School of Frontier Sciences Department of Computational Biology
2003 - 2005 The University of Tokyo Department of Pharmaceutical Sciences Faculty of Pharmaceutical Sciences
2001 - 2003 The University of Tokyo College of Arts and Sciences Science 1

Professional career (1)：

博士(科学) (東京大学)

Work history (7)：

2018/04 - 現在 National Institutes for Quantum and Radiological Science and Technology Institute for Quantum Life Science Researcher
2016/06 - 2018/03 The University of Tokyo Graduate School of Frontier Sciences Project Assistant Professor
2015/04 - 2016/05 The University of Tokyo Graduate School of Frontier Sciences Project Researcher
2014/04 - 2015/03 Japan Atomic Energy Agency Quantum Beam Science Center Post-doctoral fellow
2012/04 - 2014/03 Japan Atomic Energy Agency Quantum Beam Directorate Post-doctoral fellow

Show all

Awards (3)：

2010/03 - Graduate School of Frontier Sciences, The University of Tokyo Dean's award
2009/12 - The Molecular Simulation Sciety of Japan Student Research Award
2009/05 - Information Processing Society Japan Cell Challenge 2009

Association Membership(s) (1)：

THE MOLECULAR SIMULATION SOCIETY OF JAPAN

※ Researcher’s information displayed in J-GLOBAL is based on the information registered in researchmap. For details, see here.

Return to Previous Page