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J-GLOBAL ID：201501081279250007 Update date: Apr. 03, 2025

Hirakawa Hideki

ヒラカワヒデキ | Hirakawa Hideki

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Affiliation and department：
Homepage URL (1)： https://kaken.nii.ac.jp/d/r/80372746.ja.html

Research field (1)： Genomics

Research keywords (18)：バイオインフォマティクス , タンパク質立体構造 , バイオインフォマテクス , 比較ゲノム , 遺伝子機能 , 酵素化学 , 機能部位 , 配列解析 , ゲノム比較 , SNP , グラム陽性細菌 , メタゲノム解析 , 加水分解酵素 , 発現制御 , ゲノム , 進化 , 遺伝子 , 発現解析

Research theme for competitive and other funds (36)：

2023 - 2028 Support activities to promote plant-climate feedbacks
2023 - 2028 Unraveling the Gene Regulatory Mechanisms of Plant Phenology
2022 - 2028 Platform for Advanced Genome Science
2023 - 2026 変異系統を用いたカラマツ雌花着花の原因遺伝子の特定とその発現制御機構の解明
2023 - 2026 変異系統を用いたカラマツ雌花着花の原因遺伝子の特定とその発現制御機構の解明

2022 - 2026 Development of functional SNPs of crops and its application for identification of useful genes

2018 - 2021 Extensive characterization of domestication-related genes in buckwheat by utilizing the genetic resource of Yunnan province, China

2018 - 2021 Molecular mechanism for breaking down self-incompatibility in buckwheat

2018 - 2021 Molecular mechanisms of night-length recognition in photoperiodic flowering of chrysanthemum

2018 - 2021 Studies on the masculinization mechanism of spinach.

2018 - 2021 How hydrangea create two types of flowers?

2017 - 2021 Genetic diversity of root-knot nematode effector proteins

2016 - 2021 先進ゲノム解析研究推進プラットフォーム

2017 - 2020 Mechanism of seed enlargement during the Jomon period

2017 - 2020 Development of core collocation in garlic genetic resources through integrated omics analysis and its evaluation for functionality

2017 - 2020 Epigenetics analysis for determination of floral patterns in each cell

2017 - 2020 New insight into plant acid tolerance: physiological and molecular mechanisms of acid tolerance through mycorrhizal formation

2017 - 2020 Analysis of male sterility associated gene networks between mitochondrial and nuclear genomes in the cultivated strawberry

2017 - 2020 Study of the low-temperature dependent flowering in wild Dianthus species

2016 - 2019 Seasonal Variability in Dormancy and Flowering Competence in Chrysanthemum

2015 - 2019 Integrated genomics on important medicinal plants in Leguminosae

2015 - 2018 Linkage map construction based on LD and its application to polyploid species

2015 - 2018 Tracing the evolutionary process of plant-microbe interaction

2014 - 2018 Characterization of molecular evolution of plant isoquinoline alkaloid biosynthesis and its application to metabolic engineering

2014 - 2017 Application of integrated omics analyses by using Allium bio-resources to onion breeding

2014 - 2017 Development of a novel bioinformatics method to analyze big genome sequence data for efficient knowledge discovery

2014 - 2017 Functional analysis of physiological function-unknown or novel quinoprotein to seek an enzyme generating reduced PQQ

2014 - 2017 Comparative genomics and phenome analysis of closely related Acetic acid bacteria

2013 - 2016 Genomic information of an endophyte of Lotus japonicus to facilitate investigation on the symbiosis

2012 - 2016 Infererence of the SNP effects on gene functions

2010 - 2016 Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia

2009 - 2011 Regulation of CARMA1 signaling and its role in immune homeostasis

2008 - 2010 Secretion mechanism of pathogenic proteases and adhesions in the periodontal pathogen Porphyromonas gingivalis.

2007 - 2009 Metagenome analysis for the classification of enzymes related to hydrolysis of bacterial cell wall by sequential and enzymatic analysis

2005 - 2009 Computational Biology for complicated genome system

2004 - 2006 グラム陽性細菌におけるオルソログ遺伝子の分布の比較に関する研究

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Papers (221)：

Yuta Aoyagi Blue, Hideki Hirakawa, Youko Oono, Shingo Nakamura. Exploring differentially expressed genes and associated biological processes across embryos with different seed dormancy in barley (Hordeum vulgare). Crop Science. 2025. 65. 1
Daichi Kurata, Kento Fukutomi, Kanae Kubo, Kenta Shirasawa, Hideki Hirakawa, Munetaka Hosokawa. Comprehensive expression analysis of ERF transcription factors during chilling acclimation in Saintpaulia. Plant Growth Regulation. 2024. 104. 2. 745-759
Yuki Matsumoto, Claire Yik-Lok Chung, Sachiko Isobe, Mika Sakamoto, Xiao Lin, Ting-Fung Chan, Hideki Hirakawa, Genki Ishihara, Hon-Ming Lam, Shinobu Nakayama, et al. Chromosome-scale assembly with improved annotation provides insights into breed-wide genomic structure and diversity in domestic cats. Journal of advanced research. 2024
Yuki Matsumoto, Claire Yik-Lok Chung, Sachiko Isobe, Mika Sakamoto, Xiao Lin, Ting-Fung Chan, Hideki Hirakawa, Genki Ishihara, Hon-Ming Lam, Shinobu Nakayama, et al. Chromosome-scale assembly with improved annotation provides insights into breed-wide genomic structure and diversity in domestic cats. Journal of Advanced Research. 2024
H. Hirakawa, M. Hasegawa, N. Yokotani, S. Isobe. Genome information and its industrial applications for plants. Acta Horticulturae. 2024. 1404. 5-18

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MISC (391)：

磯部祥子, 白澤健太, 佐藤光彦, 田島直幸, 平川英樹. The Abyss of Polyploid Plant Genome Analysis. 日本生態学会大会講演要旨(Web). 2024. 71st
倉田大地, 平川英樹, 白澤健太, 細川宗孝, 細川宗孝. Relation between an exon generated by an insertion at the MYB gene and the instability of the anthocyanin accumulation in Saintpaulia. 園芸学研究別冊. 2024. 23. 1
小林安文, 平川英樹, 白澤健太, 西村和紗, 藤井健一朗, OROS Rolando, ALMANZA Giovanna, 永利友佳理, 安井康夫, 藤田泰成, et al. キヌア起源地の南米アルティプラノ北部および南部高地型キヌア自殖系統のゲノム解析. 日本分子生物学会年会プログラム・要旨集(Web). 2024. 47th
藤田凌平, 藤田凌平, 藤田凌平, 磯部祥子, 磯部祥子, 白澤健太, 平川英樹, 平川英樹, 星野洋一郎, 星野洋一郎. Analysis of homeolog expression changes in interspecific hybrid fruits with draft genome sequencing of haskap and miyama-uguisukagura. 園芸学研究別冊. 2024. 23. 2
倉田大地, 平川英樹, 白澤健太, 細川宗孝, 細川宗孝. Relation between leaf anthocyanin accumulation and transcriptional selectivity at a single MYB locus in hybrid progeny of Saintpauila. 園芸学研究別冊. 2024. 23. 2

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Patents (1)：

キク白さび病抵抗性を判定する方法、製造方法、分子マーカー、キク白さび病抵抗性関連遺伝子、キク白さび病抵抗性のキク属植物

Lectures and oral presentations (3)：

針葉樹4種のゲノム情報データベースBreedingTrees-by-Genesの構築
(第134回日本森林学会大会 2023)
菌根菌叢・細菌叢同定ウェブインターフェースの開発
(第17回日本ゲノム微生物学会年会 2023)
Construction of spinach pseudomolecules to enhance breeding efficiency
(2020)

Education (3)：

1996 - 1999 Kyushu University
1994 - 1996 Kyushu University
1990 - 1994 Kyushu University School of Agriculture

Work history (14)：

2024/05 - 現在 Kyushu University Graduate School of Bioresource and Bioenvironmental Sciences
2021/08 - 現在 Japan Aerospace Exploration Agency
2022/04 - 2024/04 Kazusa DNA Research Institute
2019/04 - 2024/03 Tohoku University
2018/03 - 2022/03 Kazusa DNA Research Institute

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