Hirakawa Hideki

ヒラカワヒデキ | Hirakawa Hideki

Affiliation and department：
Homepage URL (1)： https://kaken.nii.ac.jp/d/r/80372746.ja.html

Research field (1)： Genomics

Research keywords (18)：バイオインフォマティクス , タンパク質立体構造 , バイオインフォマテクス , 比較ゲノム , 遺伝子機能 , 酵素化学 , 機能部位 , 配列解析 , ゲノム比較 , SNP , グラム陽性細菌 , メタゲノム解析 , 加水分解酵素 , 発現制御 , ゲノム , 進化 , 遺伝子 , 発現解析

Research theme for competitive and other funds (33)：

2022 - 2028 Platform for Advanced Genome Science
2023 - 2026 変異系統を用いたカラマツ雌花着花の原因遺伝子の特定とその発現制御機構の解明
2022 - 2026 Development of functional SNPs of crops and its application for identification of useful genes
2018 - 2021 Extensive characterization of domestication-related genes in buckwheat by utilizing the genetic resource of Yunnan province, China
2018 - 2021 Molecular mechanism for breaking down self-incompatibility in buckwheat

2018 - 2021 Molecular mechanisms of night-length recognition in photoperiodic flowering of chrysanthemum

2018 - 2021 Studies on the masculinization mechanism of spinach.

2018 - 2021 How hydrangea create two types of flowers?

2017 - 2021 Genetic diversity of root-knot nematode effector proteins

2016 - 2021 先進ゲノム解析研究推進プラットフォーム

2017 - 2020 Mechanism of seed enlargement during the Jomon period

2017 - 2020 Development of core collocation in garlic genetic resources through integrated omics analysis and its evaluation for functionality

2017 - 2020 Epigenetics analysis for determination of floral patterns in each cell

2017 - 2020 New insight into plant acid tolerance: physiological and molecular mechanisms of acid tolerance through mycorrhizal formation

2017 - 2020 Analysis of male sterility associated gene networks between mitochondrial and nuclear genomes in the cultivated strawberry

2017 - 2020 Study of the low-temperature dependent flowering in wild Dianthus species

2016 - 2019 Seasonal Variability in Dormancy and Flowering Competence in Chrysanthemum

2015 - 2019 Integrated genomics on important medicinal plants in Leguminosae

2015 - 2018 Linkage map construction based on LD and its application to polyploid species

2015 - 2018 Tracing the evolutionary process of plant-microbe interaction

2014 - 2018 Characterization of molecular evolution of plant isoquinoline alkaloid biosynthesis and its application to metabolic engineering

2014 - 2017 Application of integrated omics analyses by using Allium bio-resources to onion breeding

2014 - 2017 Development of a novel bioinformatics method to analyze big genome sequence data for efficient knowledge discovery

2014 - 2017 Functional analysis of physiological function-unknown or novel quinoprotein to seek an enzyme generating reduced PQQ

2014 - 2017 Comparative genomics and phenome analysis of closely related Acetic acid bacteria

2013 - 2016 Genomic information of an endophyte of Lotus japonicus to facilitate investigation on the symbiosis

2012 - 2016 Infererence of the SNP effects on gene functions

2010 - 2016 Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia

2009 - 2011 Regulation of CARMA1 signaling and its role in immune homeostasis

2008 - 2010 Secretion mechanism of pathogenic proteases and adhesions in the periodontal pathogen Porphyromonas gingivalis.

2007 - 2009 Metagenome analysis for the classification of enzymes related to hydrolysis of bacterial cell wall by sequential and enzymatic analysis

2005 - 2009 Computational Biology for complicated genome system

2004 - 2006 グラム陽性細菌におけるオルソログ遺伝子の分布の比較に関する研究

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Papers (214)：

Ken-ichi Kurotani, Hideki Hirakawa, Kenta Shirasawa, Koya Tagiri, Moe Mori, Yasunori Ichihashi, Takamasa Suzuki, Yasuhiro Tanizawa, Yasukazu Nakamura, Sachiko Isobe, et al. Establishing a comprehensive web-based analysis platform forNicotiana benthamianagenome and transcriptome. 2023
Naoki Yokotani, Yoshinori Hasegawa, Yusuke Kouzai, Hideki Hirakawa, Sachiko Isobe. Transcriptome analysis of tomato plants following salicylic acid-induced immunity against Clavibacter michiganensis ssp. michiganensis. Plant Biotechnology. 2023
Hisako Ichihara, Manabu Yamada, Mitsuyo Kohara, Hideki Hirakawa, Andrea Ghelfi, Takuro Tamura, Akihiro Nakaya, Yasukazu Nakamura, Sachiko Shirasawa, Samatchaya Yamashita, et al. Plant GARDEN: a portal website for cross-searching between different types of genomic and genetic resources in a wide variety of plant species. BMC plant biology. 2023. 23. 1. 391-391
Jeffrey A Fawcett, Ryoma Takeshima, Shinji Kikuchi, Euki Yazaki, Tomoyuki Katsube-Tanaka, Yumei Dong, Meifang Li, Harriet V Hunt, Martin K Jones, Diane L Lister, et al. Genome sequencing reveals the genetic architecture of heterostyly and domestication history of common buckwheat. Nature plants. 2023
Ken-Ichi Kurotani, Hideki Hirakawa, Kenta Shirasawa, Yasuhiro Tanizawa, Yasukazu Nakamura, Sachiko Isobe, Michitaka Notaguchi. Genome Sequence and Analysis of Nicotiana benthamiana, the Model Plant for Interactions between Organisms. Plant & cell physiology. 2023. 64. 2. 248-257

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MISC (376)：

平尾知士, 藤澤義武, 白澤健太, 武津英太郎, 平川英樹, 三嶋賢太郎, 磯田圭哉, 山田浩雄. GRAS-Di技術を用いたコウヨウザンの連鎖地図構築とQTL解析. 日本森林学会大会学術講演集. 2023. 134th
三嶋賢太郎, 井城泰一, 平川英樹, 白澤健太, 福田陽子, 福田有樹, 宮本尚子, 平尾知士, 永野聡一郎, 小長谷賢一, et al. カラマツ雄花と雌花からの発現遺伝子の取得と着花に関わる遺伝子座の探索. 日本森林学会大会学術講演集. 2023. 134th
平川英樹, 白澤健太, 井城泰一, 高島有哉, 福田有樹, 平尾知士, 三嶋賢太郎. 針葉樹4種のゲノム情報データベースBreeding Trees-by-Genesの構築. 日本森林学会大会学術講演集. 2023. 134th
倉田大地, 平川英樹, 白澤健太, 立澤文見, 細川宗孝, 細川宗孝. Characterization of MYB transcripts in epigenetic regulated variegated petals of Saintpaulia. 園芸学研究別冊. 2023. 22. 1
福富健人, 倉田大地, 平川英樹, 白澤健太, 久保香奈衣, 細川宗孝, 細川宗孝, 細川宗孝. The changes of expression level of ERF transcription factors during cold acclimation in Saintpaulia. 園芸学研究別冊. 2023. 22. 1

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Patents (1)：

キク白さび病抵抗性を判定する方法、製造方法、分子マーカー、キク白さび病抵抗性関連遺伝子、キク白さび病抵抗性のキク属植物

Lectures and oral presentations (3)：

針葉樹4種のゲノム情報データベースBreedingTrees-by-Genesの構築
(第134回日本森林学会大会 2023)
菌根菌叢・細菌叢同定ウェブインターフェースの開発
(第17回日本ゲノム微生物学会年会 2023)
Construction of spinach pseudomolecules to enhance breeding efficiency
(2020)

Education (3)：

1996 - 1999 Kyushu University
1994 - 1996 Kyushu University
1990 - 1994 Kyushu University School of Agriculture

Work history (13)：

2022/04 - 現在 Kazusa DNA Research Institute
2021/08 - 現在 Japan Aerospace Exploration Agency
2019/04 - 現在 Tohoku University
2018/03 - 2022/03 Kazusa DNA Research Institute
2013/04 - 2019/03 Tohoku University Graduate School of Life Sciences

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