Rchr
J-GLOBAL ID：201601018129488930
Update date: Apr. 05, 2024
Kondo Hiroko X
コンドウ ヒロコ | Kondo Hiroko X
Affiliation and department：
Job title：
Associate Professor
Research theme for competitive and other funds (5)：
- 2022 - 2026 Computational study on the secondary structure dependence of the interaction in protein tertiary structure formation and the development of a new force field
- 2019 - 2023 Elucidation of dependence of secondary structure on the formation of protein structure and development of new forcefield incorporating effects of secondary structure
- 2019 - 2022 Creation of air-water interface-modified region for drug separation and design of sustainable water-based reaction and separation engineering
- 2020 - 2021 ヘムタンパク質におけるポケット形状とヘムの歪みの相関解析に対する畳み込みニューラルネットワークの最適化
- 2019 - 2020 Global analysis of hemeproteins by machine learning and molecular simulation
Papers (24)：
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Hinako Fujikawa, Hiroko X. Kondo, Yusuke Kanematsu, Yu Takano. Random Forest Classifier of Heme Proteins Using Porphyrin Distortions and Axial Ligands of Heme. Chemistry Letters. 2023. 52. 6. 503-507
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Hiroko X. Kondo, Haruki Nakamura, Yu Takano. Negative fragmentation approach for investigating the depolarization effect of neighboring residues on hydrogen bonds in π-helix. Chemical Physics Letters. 2023. 815. 140361-140361
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Hiroko X. Kondo, Hiroyuki Iizuka, Gen Masumoto, Yuichi Kabaya, Yusuke Kanematsu, Yu Takano. Prediction of Protein Function from Tertiary Structure of the Active Site in Heme Proteins by Convolutional Neural Network. Biomolecules. 2023. 13. 1. 137-137
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Tomoki Nakayoshi, Yusuke Ohnishi, Hideaki Tanaka, Genji Kurisu, Hiroko X. Kondo, Yu Takano. Effects of Active-Center Reduction of Plant-Type Ferredoxin on Its Structure and Dynamics: Computational Analysis Using Molecular Dynamics Simulations. International Journal of Molecular Sciences. 2022. 23. 24. 15913-15913
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Yu Takano, Hiroko X. Kondo, Haruki Nakamura. Quantum chemical studies on hydrogen bonds in helical secondary structures. Biophysical Reviews. 2022. 14. 6. 1369-1378
ｍore...
MISC (7)：
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近藤寛子, 飯塚博幸, 舛本現, 兼松佑典, 鷹野優. ヘム蛋白質における構造機能相関の解明に向けた蛋白質ポケットとヘムの歪みの相関解析. 日本蛋白質科学会年会プログラム・要旨集. 2021. 21st
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鷹野優, 近藤寛子, 近藤寛子, 近藤寛子, 兼松佑典, 兼松佑典, 舛本現. ヘムの構造歪みデータベースおよび解析ツールPyDISHの開発. 日本コンピュータ化学会年会講演予稿集. 2020. 2020
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近藤寛子, 兼松佑典, 藤井理則, 石井学, 舛本現, 今田康博, 吉田孝, 鷹野優. ヘムの構造歪みに着目した統計解析・電子状態計算による構造機能相関の解明とデータベースの構築. 生体分子科学討論会講演要旨集. 2019. 46th
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Hiroko X. Kondo, Noriaki Okimoto, Makoto Taiji. Improvement of Sampling Efficiency through Combined use of Molecular Dynamics Simulations with Implicit and Explicit Solvent Models. BIOPHYSICAL JOURNAL. 2013. 104. 2. 170A-171A
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Hiroko Kondo, Noriaki Okimoto, Gentaro Morimoto, Makoto Taiji. Exploration of Free-Energy Profiles With Conformational Changes of Proteins. BIOPHYSICAL JOURNAL. 2010. 98. 3. 26A-26A
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Lectures and oral presentations (11)：
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ヘムタンパク質における構造機能相関の解明に向けた構造データの網羅解析
(生物工学会北日本支部シンポジウム 2021)
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ヘム蛋白質における構造機能相関の解明に向けた蛋白質ポケットとヘムの歪みの相関解析
(第21回日本蛋白質科学会 2021)
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Analysis of an effect of mutations on the structure of CDR-H3 in the anti-HIV neutralizing antibody PG16
(The 58th Annual Meeting of the Biophysical Society of Japan 2020)
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電位依存性カリウムチャネル Kv1.2 における C 型不活性化の分子機構の解析
(凝縮系の理論化学 2019)
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Molecular dynamics study on the mechanism of voltage dependent inactivation in a mutant of the voltage-gated potassium channel
(2018)
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