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J-GLOBAL ID:201701010671243834   Update date: Apr. 02, 2025

SUGAWARA Takeshi

スガワラ タケシ | SUGAWARA Takeshi
Affiliation and department:
Research field  (3): Biological, health, and medical informatics ,  Bio-, chemical, and soft-matter physics ,  Biophysics
Research theme for competitive and other funds  (7):
  • 2025 - 2028 Chemophoresis: Theory of Molecular Chemotaxis and Its Biological Applications
  • 2024 - 2025 数理・データ・AI駆動の学内DXマルチモーダル推進
  • 2023 - 2024 Prediction of 3D Genome Dynamics Using Diffusion Models
  • 2023 - 2024 数理データサイエンスに根ざした異分野融合型研究教育基盤の構築
  • 2017 - 2023 Elucidating the 3D Genome Landscape
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Papers (15):
  • Takeshi Sugawara, Kunihiko Kaneko. Chemophoresis engine: A general mechanism of ATPase-driven cargo transport. PLoS computational biology. 2022. 18. 7. e1010324
  • Soya Shinkai, Masaki Nakagawa, Takeshi Sugawara, Yuichi Togashi, Hiroshi Ochiai, Ryuichiro Nakato, Yuichi Taniguchi, Shuichi Onami. PHi-C: deciphering Hi-C data into polymer dynamics. NAR genomics and bioinformatics. 2020. 2. 2. lqaa020
  • Soya Shinkai, Takeshi Sugawara, Hisashi Miura, Ichiro Hiratani, Shuichi Onami. Microrheology for Hi-C Data Reveals the Spectrum of the Dynamic 3D Genome Organization. Biophysical journal. 2020. 118. 9. 2220-2228
  • Hiroaki Ito, Takeshi Sugawara, Soya Shinkai, Satoshi Mizukawa, Ayaka Kondo, Hisamichi Senda, Kengo Sawai, Koki Ito, Sayaka Suzuki, Masakatsu Takaine, et al. Spindle pole body movement is affected by glucose and ammonium chloride in fission yeast. Biochemical and biophysical research communications. 2019. 511. 4. 820-825
  • Ritsuko Arai, Takeshi Sugawara, Yuko Sato, Yohei Minakuchi, Atsushi Toyoda, Kentaro Nabeshima, Hiroshi Kimura, Akatsuki Kimura. Reduction in chromosome mobility accompanies nuclear organization during early embryogenesis in Caenorhabditis elegans. Scientific reports. 2017. 7. 1. 3631-3631
more...
MISC (7):
  • Sugawara Takeshi, Masuda Shota, Uewaki Jun-ichi, Awazu Akinori, Nishimori Hiraku, Ueno Masaru. 10aAR-6 Quantitative Analyses of Chromatin Dynamics inside the Cell Nucleus. Meeting Abstracts of the Physical Society of Japan. 2014. 69.2.2. 227
  • Sugawara Takeshi, Awazu Akinori, Nishimori Hiraku. 8pPSB-56 A toy model of higher-order chromatin structures. Meeting Abstracts of the Physical Society of Japan. 2014. 69.2.2. 217
  • Sugawara Takeshi, Awazu Akinori, Nishimori Hiraku. Functional role of spatial organization of interphase chromosomes inside the cell nucleus. Meeting Abstracts of the Physical Society of Japan. 2013. 68.2.2. 241
  • Sugawara Takeshi, Arai Ritsuko, Kimura Akatsuki. 1SD-04 Quantitative analyses of chromosome dynamics in C. elegans early embryos(1SD Molecular Dynamics in the Nucleus and Gene Regulation,Symposium,The 50th Annual Meeting of the Biophysical Society of Japan). Seibutsu Butsuri. 2012. 52. supplement. S4-S5
  • Sugawara Takeshi, Kaneko Kunihiko. 20aED-4 Plasmid dynamics driven by chemophoresis. Meeting Abstracts of the Physical Society of Japan. 2010. 65.1.2. 361
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Lectures and oral presentations  (31):
  • Unraveling 3D Genome Dynamics with Generative Models
    (2025)
  • 生成データ駆動数理モデル:3D ゲノム動態を紐解く
    (第2回情報物理数理セミナーin 湯布院 2025)
  • 遺伝子誘導の数理モデル
    (日本物理学会第79回年次大会 2024)
  • Prediction of 3D Genome Dynamics Using a Generative Model
    (21st IUPAB & 62nd Biophysical Society of Japan Joint Congress 2024 2024)
  • 生成モデルを用いた3Dゲノム動態予測
    (日本物理学会2024年春季大会 2024)
more...
Professional career (1):
  • Ph.D. (The University of Tokyo)
Work history (8):
  • 2023/04 - 現在 Kochi University Center for Data Science
  • 2023/04 - 2025/03 東京大学 大学院理学系研究科附属 生物普遍性研究機構 客員研究員
  • 2021/04 - 2023/03 The University of Tokyo Graduate School of Science
  • 2018/04 - 2021/03 The University of Tokyo Graduate School of Medicine
  • 2017/08 - 2021/03 理化学研究所 生命機能科学研究センター 客員研究員
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