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J-GLOBAL ID：201801006531847080 Update date: Apr. 03, 2025

Ushijima Koichiro

ウシジマコウイチロウ | Ushijima Koichiro

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Affiliation and department：

Research field (1)： Horticulture

Research theme for competitive and other funds (22)：

2024 - 2029 Transcriptome/Cistrome analysis of ethylene synthesis mutants to elucidate the regulation of fruit ripening
2023 - 2027 Construction of a fine reference genome of Hyuganatsu applied for identification of causal genes inducing mutate traits
2022 - 2027 Construction of the peach pan-genome and its application to the identification of genes that control the major traits of peach
2020 - 2024 New Frontier of Fruit Postharvest Physiology-Low Temperature modulated Ripening and its application
2019 - 2024 Genetic control of long term storage in melons

2020 - 2023 セイヨウナシの周縁キメラ分離カルスを利用した果皮の全面赤着色メカニズムの解明

2019 - 2023 Is self-incompatibility in Citrus spp. governed by S-RNase?

2018 - 2023 Characterization of long shelf-life and pulp disorder-alleviating mechanisms using late-harvest rare peach cultivars bred private growers as genetic resource

2019 - 2022 Studies on regulatory mechanisms of ultra-late maturing trait in 'Gento' peach

2016 - 2019 Studies on ripening and scenesense inducing-mechanism(s) controlled by factors at downstream of signaling pathway in non-climactericl fruit

2016 - 2019 Iso-Seq and RNA-seq based transcriptome analyses associated with root-knot nematode resistance in sweetpotato

2014 - 2019 Molecular biological studies on shelf-life in melon using various genetic resources

2016 - 2018 Comprehensive analysis of full length cDNA and alternative splicing for the genes related to fruit development and ripening

2013 - 2017 Molecular Analysis for heterostyly by using genomics and transcriptmics approches

2012 - 2017 DIfferent mechanisms of self-incompatibility in Rosaceae: non-self recognition by multiple factors type ans self recognition by single factor type

2013 - 2016 Attempt for development of the novel method using JAZ, a hub factor for ethylene and JA signal crosstalk, to regulate fruit ripening and senescence

2011 - 2013 Regulation of IPT gene under control of senescence activated promoter

2008 - 2011 Analysis of molecular mechanism, origin and diversity of gametophytic self-incompatibility systems

2008 - 2010 Establishment of transient RNAi methods in tree fruit and it's application on evaluation of genes regulating fruit ripening

2007 - 2009 Studies on transcriptional regulation for ethylene biosynthesis genes in fruit ripening

2005 - 2007 Identification of key factor fur cell wall disassembly in fruit by proteome analysis and transgenic technology

2005 - 2006 ノンクライマクテリック型果実の成熟制御因子の同定

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Papers (66)：

M. Muqadas, O. W. Mitalo, C. Yano, K. Ohashi, N. Hira, T. Akagi, K. Ushijima, Y. Kubo. Effect of sugar-ester edible coating on postharvest life and development of chilling injury in tomatoes during ambient and cold storage. Acta Horticulturae. 2024. 3. 1404. 437-444
C. Yano, T. Kashiwamoto, M. Muqadas, K. Ohashi, O.W. Mitalo, T. Akagi, Y. Kubo, T. Kawai, K. Ushijima, F. Fukuda. Effect of storage temperature and 1-MCP treatment on fruit ripening in Japanese apricot fruit (Prunus mume). Acta Horticulturae. 2024. 1404. 717-724
Kazusa Nishimura, Hiroyuki Kokaji, Ko Motoki, Akira Yamazaki, Kyoka Nagasaka, Rihito Takisawa, Yasuo Yasui, Takashi Kawai, Koichiro Ushijima, Masanori Yamasaki, et al. Degenerate oligonucleotide primer MIG-seq: an effective PCR-based method for high-throughput genotyping. The Plant journal : for cell and molecular biology. 2024. 118. 6. 2296-2317
Takashi Akagi, Naoko Fujita, Kanae Masuda, Kenta Shirasawa, Kiyotaka Nagaki, Ayano Horiuchi, Eriko Kuwada, Riko Kunou, Koki Nakamura, Yoko Ikeda, et al. Rapid and dynamic evolution of a giant Y chromosome inSilene latifolia. 2023
Kanae Masuda, Rika Uchida, Naoko Fujita, Yoshiaki Miyamoto, Takahiro Yasue, Yasutaka Kubo, Koichiro Ushijima, Seiichi Uchida, Takashi Akagi. Application of deep learning diagnosis for multiple traits sorting in peach fruit. Postharvest Biology and Technology. 2023. 201. 112348-112348

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MISC (64)：

赤木剛士, 藤田尚子, 増田佳苗, 白澤健太, 長岐清孝, 堀内綾乃, 桑田恵理子, 久能理子, 中村光希, 池田陽子, et al. Evolutionary dynamics of giant sex chromosomes in the genus Silene. 育種学研究. 2024. 26
堀内綾乃, 堀内綾乃, 尾上典之, 南川舞, 西村和紗, 白澤健太, 久保康隆, 牛島幸一郎, 赤木剛士. GWASによる六倍体カキ品種群の果実形状多様性機構の解明に向けて. 日本分子生物学会年会プログラム・要旨集(Web). 2024. 47th
堀内綾乃, 堀内綾乃, 尾上典之, 松崎隆介, 南川舞, 西村和紗, 白澤健太, 久保康隆, 牛島幸一郎, 赤木剛士. Population structure analysis and GWAS of fruit shape traits in hexaploid persimmon cultivars. 育種学研究. 2024. 26
藤田尚子, 白澤健太, 牛島幸一郎, 赤木剛士. Silene属植物の全ゲノム比較解析から性の成立過程を紐解く. Plant Morphology. 2023. 35. 1
堀内綾乃, 増田佳苗, 白澤健太, 尾上典之, 藤田尚子, 牛島幸一郎, 赤木剛士. Chromosome-scale genome assembly of a persimmon cv. Taishu revealed rapid evolution of a post-Y chromosome. 園芸学研究別冊. 2023. 22. 1

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Professional career (1)：

博士(理学)

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