Kayla Wilhoit, Shun Yamanouchi, Bo-Jyun Chen, Yo Y Yamasaki, Asano Ishikawa, Jun Inoue, Wataru Iwasaki, Jun Kitano. Convergent Evolution and Predictability of Gene Copy Numbers Associated with Diets in Mammals. Genome Biology and Evolution. 2025
Yuki Yoshioka, Megumi Kanai, Shogo Gishitomi, Nana Arakaki, Tatsuki Koido, Chuya Shinzato, Jun Inoue, Tomofumi Nagata, Noriyuki Satoh. Extensive mitochondrial genomic analyses reveal dynamic gene order rearrangements in the class Octocorallia (Cnidaria: Anthozoa). Gene Reports. 2024. 102111-102111
Jun Inoue, Chuya Shinzato, Junya Hirai, Sachihiko Itoh, Yuki Minegishi, Shin-Ichi Ito, Susumu Hyodo. phyloBARCODER: A web tool for phylogenetic classification of eukaryote metabarcodes using custom reference databases. Molecular biology and evolution. 2024
Yubei Wu, Junya Hirai, Fanyu Zhou, Mitsunori Iwataki, Siyu Jiang, Hiroshi Ogawa, Jun Inoue, Susumu Hyodo, Hiroaki Saito. Diversity and biogeography of dinoflagellates in the Kuroshio region revealed by 18S rRNA metabarcoding. Frontiers in Marine Science. 2024. 11
Zeshu Yu, Marty Kwok-Shing Wong, Jun Inoue, Sk Istiaque Ahmed, Tomihiko Higuchi, Susumu Hyodo, Sachihiko Itoh, Kosei Komatsu, Hiroaki Saito, Shin-ichi Ito. Environmental DNA in the Kuroshio reveals environment-dependent distribution of economically important small pelagic fish. Frontiers in Marine Science. 2023. 10
Jun Inoue. Commentary on ORTHOSCOPE: a web tool for genome comparisons. Journal of Genetics and Genomes. 2021
Miller MJ, Kawakami Y, Aoyama J, Inagaki T, Oya M, Shinoda A, Sameshima M, Inoue J, Kawai M, Marquet G, et al. Distribution, abundance and life history characteristics of the anguilliform leptocephali in the Celebes and Sulu Seas during the KH-00-1-cruise. Preliminary report of the R/V Hakuho Maru Cruise KH-00-1. Ocean research institute The university of Tokyo. 2003. 39-47