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J-GLOBAL ID:201801017945252764   Update date: Oct. 09, 2024

Okuda Aya

オクダ アヤ | Okuda Aya
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Affiliation and department:
Research field  (1): Applied biochemistry
Research theme for competitive and other funds  (7):
  • 2023 - 2025 区分重水素化試料調製を目指した酵素によるタンパク質ライゲーション技術の確立
  • 2022 - 2023 大豆たん白質複合体の溶液散乱法・超遠心分析・質量分析による統合的解析
  • 2019 - 2022 量子ビーム相関解析法による生体高分子構造・ダイナミクスの探求
  • 2019 - 2020 中性子小角散乱による大豆種子貯蔵たん白質構造の解析方法の開発
  • 2019 - 2020 中性子小角散乱測定による酸化的フォールディング酵素ER-60のタンパク質分子ダイナミクスの解析
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Papers (18):
  • Keisuke Yuzu, Hiroshi Imamura, Takuro Nozaki, Yuki Fujii, Shaymaa Mohamed Mohamed Badawy, Ken Morishima, Aya Okuda, Rintaro Inoue, Masaaki Sugiyama, Eri Chatani. Mechanistic modeling of amyloid oligomer and protofibril formation in bovine insulin. Journal of Molecular Biology. 2024. 168461-168461
  • Hisashi Ishida, Atsushi Matsumoto, Hiroki Tanaka, Aya Okuda, Ken Morishima, Paul A Wade, Hitoshi Kurumizaka, Masaaki Sugiyama, Hidetoshi Kono. Structural and Dynamical Changes of Nucleosome upon GATA3 Binding. Journal of molecular biology. 2023. 168308-168308
  • Toshiyuki Chatake, Yasuhide Yanagisawa, Risa Murakami, Tadanori Ohsugi, Hiroyuki Sumi, Takumi Takata, Aya Okuda, Ken Morishima, Rintaro Inoue, Masaaki Sugiyama. Characterization of K-binding factor involved in water-soluble complex of menaquinone-7 produced by Bacillus subtilis natto. The Journal of Biochemistry. 2023
  • Aya Okuda, Masahiro Shimizu, Rintaro Inoue, Reiko Urade, Masaaki Sugiyama. Efficient Multiple Domain Ligation for Proteins Using Asparaginyl Endopeptidase by Selection of Appropriate Ligation Sites Based on Steric Hindrance. Angewandte Chemie (International ed. in English). 2023. 62. 1. e202214412
  • Masahiro Shimizu, Aya Okuda, Ken Morishima, Rintaro Inoue, Nobuhiro Sato, Yasuhiro Yunoki, Reiko Urade, Masaaki Sugiyama. Extracting time series matching a small-angle X-ray scattering profile from trajectories of molecular dynamics simulations. Scientific Reports. 2022. 12. 1. 9970-9970
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MISC (7):
  • 茶竹俊行, 柳澤泰任, 高田匠, 奥田綾, 守島健, 井上倫太郎, 杉山正明. Study of water-soluble vitamin K2 from Bacillus subtilis natto. KURNS-EKR (Web). 2024. 19
  • 柚佳祐, 今村比呂志, 野崎拓郎, 藤井悠生, 守島健, 奥田綾, 井上倫太郎, 杉山正明, 茶谷絵理. ウシ由来インスリンのアミロイド核形成に見られるオリゴマーおよびプロトフィブリル形成機構. 日本蛋白質科学会年会プログラム・要旨集. 2023. 23rd (CD-ROM)
  • 柚木康弘, 児玉篤治, 矢木真穂, 矢木真穂, 矢木真穂, 守島健, 佐藤信浩, 奥田綾, 清水将裕, 井上倫太郎, et al. The molecular machine KaiC hexamer regulates circadian clock system. KURNS-EKR (Web). 2022. 15
  • 柚木康弘, 松本淳, 守島健, MARTEL Anne, PORCAR Lionel, 佐藤信浩, 與語理那, 與語理那, 與語理那, 富永大輝, et al. Overall structure of the fully assembled KaiABC complex in cyanobacterial circadian system analyzed by an integrated solution scattering-computational approach. 時間生物学. 2022. 28. 2
  • 守島健, 矢木真穂, 矢木真穂, 矢木真穂, 井上倫太郎, 佐藤信浩, 奥田綾, 裏出令子, 加藤晃一, 加藤晃一, et al. 小角散乱と超遠心分析の協奏的解析(AUC-SAS)による弱会合性タンパク質複合体の構造解析. KURNS-EKR (Web). 2020. 6
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Education (3):
  • 2014 - 2017 Kyoto University Graduate School of Agriculture Division of Agronomy and Horticultural Science
  • 2012 - 2014 Kyoto University Graduate School of Agriculture Division of Agronomy and Horticultural Science
  • 2008 - 2012 Kyoto University Faculty of Agriculture
Professional career (1):
  • 博士(農学) (京都大学)
Work history (6):
  • 2023/10 - 現在 Kyoto University Institute for Integrated Radiation and Nuclear Science
  • 2021/02 - 2023/09 Kyoto University Institute for Integrated Radiation and Nuclear Science
  • 2019/04 - 2021/01 Kyoto University Institute for Integrated Radiation and Nuclear Science
  • 2018/04 - 2019/03 Kyoto University Graduate School of Agriculture
  • 2017/04 - 2018/03 Kyoto University Graduate School of Agriculture
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Association Membership(s) (4):
PROTEIN SCIENCE SOCIETY OF JAPAN ,  THE JAPANESE BIOCHEMICAL SOCIETY ,  JAPAN SOCIETY FOR BIOSCIENCE, BIOTECHNOLOGY, AND AGROCHEMISTRY ,  日本中性子科学会
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