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J-GLOBAL ID:201801020154089925   Update date: Feb. 02, 2025

Ishiya Koji

イシヤ コウジ | Ishiya Koji
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Affiliation and department:
Job title: Assistant professor
Research field  (4): Biological, health, and medical informatics ,  Evolutionary biology ,  Genomics ,  Applied anthropology
Research keywords  (9): Bioinformatics ,  Genomics ,  Metagenomics ,  Paleogenome ,  Population Genetics ,  Phylogenetics ,  Software Development ,  Machine Learning ,  Evolution
Research theme for competitive and other funds  (10):
  • 2024 - 2026 生物考古情報の復元に向けたパレオメタゲノミクス技術の開発
  • 2021 - 2026 Social Organization and Funerary Systems of Semi-Sedentary Hunter-Gatherers: reconstruction of prehistoric societies through advanced bio-archaeology
  • 2023 - 2026 メタゲノムを利用した試料属性推定システムの構築
  • 2020 - 2025 パレオゲノミクス解析プラットフォーム開発とその応用
  • 2021 - 2024 シン・パレオゲノミクスが創る博物館資料群活用の新展開
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Papers (23):
  • Koji Ishiya, Fuzuki Mizuno, Jun Gojobori, Masahiko Kumagai, Yasuhiro Taniguchi, Osamu Kondo, Masami Matsushita, Takayuki Matsushita, Li Wang, Kunihiko Kurosaki, et al. High-coverage genome sequencing of Yayoi and Jomon individuals shed light on prehistoric human population history in East Eurasian. bioRχiv. 2024
  • Rikako Sato, Harutake Yamazaki, Kazuki Mori, Sachiyo Aburatani, Koji Ishiya, Yosuke Shida, Wataru Ogasawara, Kosuke Tashiro, Satoru Kuhara, Hiroaki Takaku. Identification and characterization of the suppressed lipid accumulation-related gene, SLA1, in the oleaginous yeast Lipomyces starkeyi. Bioscience, Biotechnology, and Biochemistry. 2024
  • 石谷孔司. バイオインフォマティクスによるバイオものづくり -情報科学が加速するバイオものづくりの新展開. 化学と工業. 2024. 77. 4. 281-283
  • Koji Ishiya, Takeaki Taniguchi. Recognition of differential culture conditions with dimensional reduction approach. Journal of Physics: Conference Series. 2024. 2701. 1. 012139-012139
  • Fuzuki Mizuno, Fuyuki Tokanai, Masahiko Kumagai, Koji Ishiya, Saburo Sugiyama, Michiko Hayashi, Kunihiko Kurosaki, Shintaroh Ueda. Bioarchaeological study of ancient Teotihuacans based on complete mitochondrial genome sequences and diet isotopes. Annals of human biology. 2023. 50. 1. 390-398
more...
MISC (14):
  • 佐藤里佳子, 森一樹, 荒学志, 山崎晴丈, 田代康介, 石谷孔司, 油谷幸代, 高久洋暁. Isolation of oleaginous yeast Lipomyces starkeyi mutants with high lipid accumulation and identification of a gene involved in high lipid production. 日本農芸化学会大会講演要旨集(Web). 2024. 2024
  • 津田朝陽, 佐藤里佳子, 寺澤大輝, 荒学志, 荒学志, 山崎晴丈, 荒木秀雄, 石谷孔司, 油谷幸代, 白井智量, et al. Lipid productivity of transforming the oleaginous yeast Lipomyces starkeyi strain with NADP-dependent malic enzyme gene. 日本農芸化学会大会講演要旨集(Web). 2023. 2023
  • 佐藤里佳子, 荒学志, 荒学志, 山崎晴丈, 荒木秀雄, 石谷孔司, 油谷幸代, 高久洋暁. Effect of mutation sites of high lipid productivity responsible gene 110315 on lipid biosynthesis pathway in oleaginous yeast Lipomyces starkeyi. 日本農芸化学会大会講演要旨集(Web). 2023. 2023
  • 樋口裕太, 佐藤里佳子, 荒学志, 石谷孔司, 油谷幸代, 山崎晴丈, 高久洋暁. Involvement of C-terminal region of lipid synthesis regulatory factor LsSpt23p in lipid accumulation in the oleaginous yeast Lipomyces starkeyi. 日本生物工学会大会講演要旨集. 2023. 75th
  • 丸山魁斗, 佐藤里佳子, 荒学志, 荒学志, 荒木秀雄, 石谷孔司, 油谷幸代, 山崎晴丈, 高久洋暁. Highly efficient CRISPR/Cas9-mediated homologous recombination in the oleaginous yeast Lipomyces starkeyi. 日本生物工学会大会講演要旨集. 2023. 75th
more...
Patents (1):
  • 膜分離活性汚泥法よる汚濁水の処理方法
Lectures and oral presentations  (25):
  • オープンサイエンス時代のゲノム人類学 :データ相互利活用に向けた課題と展望
    (研究基盤EXPO2025 2025)
  • パレオゲノミクスのシンカ -古DNAが可能とするもの-
    (サピエンス進化医学研究センター第1回公開シンポジウム 2024)
  • 高度に効率化された古DNA解析パイプラインの開発
    (第47回日本分子生物学会年会 2024)
  • 考古試料からの 網羅的なパレオメタゲノム評価技術の開発
    (日本微生物生態学会第37回広島大会 2024)
  • Human biological sex determination using X/Y-linked k-mer signatures
    (1st Asia & Pacific Bioinformatics Joint Conference (APBJC2024) 2024)
more...
Works (2):
  • MitoIMP
    Koji Ishiya 2019 -
  • MitoSuite
    Koji Ishiya 2017 -
Education (1):
  • 2015 - 2018 東京大学大学院 理学系研究科生物科学専攻 博士課程
Professional career (1):
  • 理学(博士) (東京大学)
Work history (8):
  • 2024/07 - 現在 Kanazawa University Sapiens Life sciences, Evolution and Medicine Research Center Assistant professor
  • 2021/06 - 現在 Kanazawa University Institute for the Study of Ancient Civilizations and Cultural Resources
  • 2023/10 - 2024/06 National Institute of Advanced Industrial Science and Technology Senior Research Scientist
  • 2021/09 - 2024/06 Waseda University
  • 2020/04 - 2023/09 National Institute of Advanced Industrial Science and Technology Research Scientist
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Awards (3):
  • 2022/11 - Japanese Society for DNA Polymorphism Research 若手研究賞
  • 2017/12 - 日本DNA多型学会 優秀研究賞
  • 2013/03 - 理学部優秀学生賞
Association Membership(s) (5):
JAPANESE SOCIETY FOR DNA POLYMORPHISM RESEARCH ,  SOCIETY OF EVOLUTIONARY STUDIES, JAPAN ,  THE ANTHROPOLOGICAL SOCIETY OF NIPPON ,  JAPANESE SOCIETY FOR BIOINFORMATICS ,  European Society for Evolutionary Biology
※ Researcher’s information displayed in J-GLOBAL is based on the information registered in researchmap. For details, see here.

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