2013 - 2016 Development of fundamental methods for fast, accurate, and stable simulation of molecular dynamics
Papers (54)：
Junichi Higo, Gert-Jan Bekker, Narutoshi Kamiya, Ikuo Fukuda, Yoshifumi Fukunishi. Binding free-energy landscapes of small molecule binder and non-binder to FMN riboswitch: All-atom molecular dynamics. Biophysics and Physicobiology. 2023. 20. 4. n/a-n/a
Junichi Higo, Kota Kasahara, Gert-Jan Bekker, Benson Ma, Shun Sakuraba, Shinji Iida, Narutoshi Kamiya, Ikuo Fukuda, Hidetoshi Kono, Yoshifumi Fukunishi, et al. Fly casting with ligand sliding and orientational selection supporting complex formation of a GPCR and a middle sized flexible molecule. Scientific Reports. 2022. 12. 1
Ikuo Fukuda, Kei Moritsugu. Analysis of multiple data sequences with different distributions: defining common principal component axes by ergodic sequence generation and multiple reweighting composition. IOP SciNotes. 2021
Kei Moritsugu, Koh Takeuchi, Narutoshi Kamiya, Junichi Higo, Isao Yasumatsu, Yoshifumi Fukunishi, Ikuo Fukuda. Flexibility and Cell Permeability of Cyclic Ras-Inhibitor Peptides Revealed by the Coupled Nosé-Hoover Equation. Journal of chemical information and modeling. 2021. 61. 4. 1921-1930
Fukuda Ikuo, Kamiya Narutoshi, Nakamura Haruki. 30aPS-149 Efficient calculation of electrostatic interactions by the zero-multipole summation method. Meeting abstracts of the Physical Society of Japan. 2014. 69. 1. 434-434
