Ito Yuma

Affiliation and department：
Job title： Assistant Professor

Research field (1)： Biophysics

Research keywords (2)： Single-molecule imaging , Super-resolution microscopy

Research theme for competitive and other funds (5)：

2018 - 2023 細胞核・クロマチン構造のダイナミクスと遺伝子制御
2020 - 2022 Super-resolution single-molecule dynamics analysis of phase separation formation by the development of a drug-inducible system for intracellular phase separation
2018 - 2020 Super-resolved single-molecule imaging of nuclear proteins for quantification of phase separated behavior
2013 - 2018 Nanoanalysis of the molecular mechanism of chromatin functions using single molecule imaging in vio and super-resolution microscopy
2012 - 2015 多色1分子イメージングによるT細胞活性化シグナル分子の時空間的な相互作用の解明

Papers (11)：

Yuma Ito, Masanori Hirose, Makio Tokunaga. Slitflow: A Python framework for single-molecule dynamics and localization analysis. SoftwareX. 2023. 23. 101462-101462
Haruka Matsumori, Kenji Watanabe, Hiroaki Tachiwana, Tomoko Fujita, Yuma Ito, Makio Tokunaga, Kumiko Sakata-Sogawa, Hiroko Osakada, Tokuko Haraguchi, Akinori Awazu, et al. Ribosomal protein L5 facilitates rDNA-bundled condensate and nucleolar assembly. Life science alliance. 2022. 5. 7
Satoshi Uchino, Yuma Ito, Yuko Sato, Tetsuya Handa, Yasuyuki Ohkawa, Makio Tokunaga, Hiroshi Kimura. Live imaging of transcription sites using an elongating RNA polymerase II-specific probe. The Journal of cell biology. 2022. 221. 2
Yang Liu, Ning Zhao, Masato T Kanemaki, Yotaro Yamamoto, Yoshifusa Sadamura, Yuma Ito, Makio Tokunaga, Timothy J Stasevich, Hiroshi Kimura. Visualizing looping of two endogenous genomic loci using synthetic zinc-finger proteins with anti-FLAG and anti-HA frankenbodies in living cells. Genes to cells : devoted to molecular & cellular mechanisms. 2021. 26. 11. 905-926
Uchino S, Ito Y, Sato Y, Handa T, Yasuyuki Ohkawa, Tokunaga M, Kimura H. Visualizing transcription sites in living cells using a genetically encoded probe specific for the elongating form of RNA polymerase II. bioRxiv. 2021. No. 2021.04.27

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MISC (2)：

伊藤由馬, 徳永万喜洋. 生細胞内の1分子動態と相互作用の定量解析. パリティ "特集:物理科学、この一年". 2019. Vol. 34
戸田収, 細谷悟史, 根岸瑠美, 伊藤由馬, 伊藤由馬, 十川久美子, 十川久美子, THANAI Paxton, 朴明宣, 大野敏, et al. 神経細胞における生体膜ラフトの動作メカニズムの解明. 日本分子生物学会年会プログラム・要旨集(Web). 2012. 35th

Books (1)：

Lectures and oral presentations (6)：

Visualizing and quantifying single-molecule dynamics in living cells
(9th Tokyo Tech International Symposium on Life Science and Technology 2021)
Quantification of dynamics and kinetics using single-molecule and super-resolution imaging in living cells
(The 58th Annual Meeting of the Biophysical Society of Japan 2020)
Nano-scale localization analysis of histone variants in living cells using single-molecule super-resolution imaging
(2020)
Multicolor single-molecule imaging analysis of the nucleolar proteins
(2020)
Light field simulation of single-molecule imaging for aberration correction using adaptive optics
(2020)

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Professional career (1)：

Work history (4)：

2024/04 - 現在 Kyushu University Medical Institute of Bioregulation, High-Depth Omics Initiatives for Innovation Assistant professor
2019/03 - 2024/03 Tokyo Institute of Technology School of Life Science and Technology Assistant Professor
2018/03 - 2019/02 Tokyo Institute of Technology School of Life Science and Technology Specially Appointed Assistant Professor
2012/04 - 2015/03 Japan Society for the Promotion of Science

Association Membership(s) (2)：

日本分子生物学会 , 日本生物物理学会

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