Dhira Saraswati Anggramukti, Eiji Ishii, Andre Pratama, Mohamad Al Kadi, Tetsuya Iida, Toshio Kodama, Shigeaki Matsuda. The read-through transcription-mediated autoactivation circuit for virulence regulator expression drives robust type III secretion system 2 expression in Vibrio parahaemolyticus. PLoS pathogens. 2024. 20. 3. e1012094
Andre Pratama, Eiji Ishii, Toshio Kodama, Tetsuya Iida, Shigeaki Matsuda. The Xenogeneic Silencer Histone-Like Nucleoid-Structuring Protein Mediates the Temperature and Salinity-Dependent Regulation of the Type III Secretion System 2 in Vibrio parahaemolyticus. Journal of bacteriology. 2023. 205. 1. e0026622
Mohamad Al Kadi, Eiji Ishii, Dang Tat Truong, Daisuke Motooka, Shigeaki Matsuda, Tetsuya Iida, Toshio Kodama, Daisuke Okuzaki. Direct RNA Sequencing Unfolds the Complex Transcriptome of Vibrio parahaemolyticus. mSystems. 2021. 6. 6. e0099621
Eiji Ishii, Yoko Eguchi. Diversity in Sensing and Signaling of Bacterial Sensor Histidine Kinases. Biomolecules. 2021. 11. 10
Kohei Yoshitani, Eiji Ishii, Katsuhide Taniguchi, Hiroshi Sugimoto, Yoshitsugu Shiro, Yoshinori Akiyama, Akinori Kato, Ryutaro Utsumi, Yoko Eguchi. Identification of an internal cavity in the PhoQ sensor domain for PhoQ activity and SafA-mediated control. Bioscience, Biotechnology and Biochemistry. 2019. 83. 4. 684-694
Hiroyuki Mori, Sohei Sakashita, Jun Ito, Eiji Ishii, Yoshinori Akiyama. Identification and characterization of a translation arrest motif in VemP by systematic mutational analysis. Journal of Biological Chemistry. 2018. 293. 8. 2915-2926
Eiji Ishii, Shinobu Chiba, Narimasa Hashimoto, Seiji Kojima, Michio Homma, Koreaki Ito, Yoshinori Akiyama, Hiroyuki Mori. Erratum: Nascent chain-monitored remodeling of the Sec machinery for salinity adaptation of marine bacteria (Proceedings of the National Academy of Sciences of the United States of America (2015) 112:51 (E7157)). Proceedings of the National Academy of Sciences of the United States of America. 2015. 112. 51. E7157
Eiji Ishii, Shinobu Chiba, Narimasa Hashimoto, Seiji Kojima, Michio Homma, Koreaki Ito, Yoshinori Akiyama, Hiroyuki Mori. Nascent chain-monitored remodeling of the Sec machinery for salinity adaptation of marine bacteria. Proceedings of the National Academy of Sciences of the United States of America. 2015. 112. 40. E5513-E5522
Eiji Ishii, Yoko Eguchi, Ryutaro Utsumi. Mechanism of activation of PhoQ/PhoP two-component signal transduction by SafA, an auxiliary protein of PhoQ histidine kinase in escherichia coli. Bioscience, Biotechnology and Biochemistry. 2013. 77. 4. 814-819
Takafumi Watanabe, Masayuki Igarashi, Toshihide Okajima, Eiji Ishii, Hirokazu Kino, Masaki Hatano, Ryuichi Sawa, Maya Umekita, Tomoyuki Kimura, Sho Okamoto, et al. Isolation and characterization of signermycin B, an antibiotic that targets the dimerization domain of histidine kinase WalK. Antimicrobial Agents and Chemotherapy. 2012. 56. 7. 3657-3663
Yoko Eguchi, Eiji Ishii, Masatake Yamane, Ryutaro Utsumi. The connector SafA interacts with the multi-sensing domain of PhoQ in Escherichia coli. Molecular Microbiology. 2012. 85. 2. 299-313
Yoko Eguchi, Eiji Ishii, Kensuke Hata, Ryutaro Utsumi. Regulation of acid resistance by connectors of two-component signal transduction systems in Escherichia coli. Journal of Bacteriology. 2011. 193. 5. 1222-1228