Shuya Ikeda, Kiyoko F. Aoki-Kinoshita, Hirokazu Chiba, Susumu Goto, Masae Hosoda, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Tazro Ohta, Hiromasa Ono, et al. Expanding the concept of ID conversion in TogoID by introducing multi-semantic and label features. Journal of Biomedical Semantics. 2025. 16. 1
Yuka MASAMURA, Ryuichi KUBO, Yuki MIDORIKAWA, Natsuko O SHINOZAKI, Satoshi WATANABE, Sayumi MAEKAWA, Aya K TAKEDA, Tazro OHTA. Differences in the human gut microbiota with varying depressive symptom severity scores. Bioscience of Microbiota, Food and Health. 2024
Zhaonan Zou, Tazro Ohta, Shinya Oki. ChIP-Atlas 3.0: a data-mining suite to explore chromosome architecture together with large-scale regulome data. Nucleic Acids Research. 2024. 52. W1. W45-W53
Mats Perk, Arun Isaac, Tazro Ohta, Egon Willighagen, Leyla Jael Castro, Toshiaki Katayama, Pjotr Prins. Metadata handling for BioHackathon publications through BioHackrXiv. 2024
Tazro Ohta, Ayaka Hananoe, Ayano Fukushima-Nomura, Koichi Ashizaki, Aiko Sekita, Jun Seita, Eiryo Kawakami, Kazuhiro Sakurada, Masayuki Amagai, Haruhiko Koseki, et al. Best practices for multimodal clinical data management and integration: An atopic dermatitis research case. Allergology international : official journal of the Japanese Society of Allergology. 2023
Hirotaka Suetake, Tsukasa Fukusato, Takeo Igarashi, Tazro Ohta. A workflow reproducibility scale for automatic validation of biological interpretation results. GigaScience. 2023. 12
Hirotaka Suetake, Tsukasa Fukusato, Takeo Igarashi, Tazro Ohta. Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows. GigaScience. 2023
Egon Willighagen, Tazro Ohta, Leyla Jael Castro, Pjotr Prins. CiTO support for BioHackrXiv. BioHackrXiv. 2023
Tazro Ohta, Yuh Shiwa. Hybrid Genome Assembly of Short and Long Reads in Galaxy. Methods in Molecular Biology. 2023. 15-30
Pjotr Prins, Tazro Ohta, Leyla Jael Castro, Toshiaki Katayama. Metadata for BioHackrXiv Markdown publications. BioHackrXiv. 2022
Osamu Nishimura, John Rozewicki, Kazuaki Yamaguchi, Kaori Tatsumi, Yuta Ohishi, Tazro Ohta, Masaru Yagura, Taiki Niwa, Chiharu Tanegashima, Akinori Teramura, et al. Squalomix: shark and ray genome analysis consortium and its data sharing platform. F1000Research. 2022. 11. 1077-1077
Hirotaka Suetake, Tomoya Tanjo, Manabu Ishii, Bruno P. Kinoshita, Takeshi Fujino, Tsuyoshi Hachiya, Yuichi Kodama, Takatomo Fujisawa, Osamu Ogasawara, Atsushi Shimizu, et al. Sapporo: A workflow execution service that encourages the reuse of workflows in various languages in bioinformatics. F1000Research. 2022. 11. 889-889
Shuya Ikeda, Hiromasa Ono, Tazro Ohta, Hirokazu Chiba, Yuki Naito, Yuki Moriya, Shuichi Kawashima, Yasunori Yamamoto, Shinobu Okamoto, Susumu Goto, et al. TogoID: an exploratory ID converter to bridge biological datasets. Bioinformatics. 2022
Zhaonan Zou, Tazro Ohta, Fumihito Miura, Shinya Oki. ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data. Nucleic acids research. 2022
Tiffany Amariuta, Kazuyoshi Ishigaki, Hiroki Sugishita, Tazro Ohta, Masaru Koido, Kushal K. Dey, Koichi Matsuda, Yoshinori Murakami, Alkes L. Price, Eiryo Kawakami, et al. Improving the trans-ancestry portability of polygenic risk scores by prioritizing variants in predicted cell-type-specific regulatory elements. Nature Genetics. 2020. 52. 12. 1346-1354
Leyla Jael Castro, Jerven Bolleman, michel dumontier, Simon Jupp, Jose Emilio Labra-Gayo, Thomas Liener, Tazro Ohta, Núria Queralt-Rosinach, Chunlei Wu. Data validation and schema interoperability. 2020
Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, et al. BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research. 2020. 9. 136-136