Patrick P. Edger, Douglas E. Soltis, Shunsuke Yoshioka, Mario Vallejo-Marin, Rie Shimizu-Inatsugi, Kentaro K. Shimizu, Armel Salmon, Simon Hiscock, Malika Ainouche, Pamela S. Soltis. Natural neopolyploids: a stimulus for novel research. New Phytologist. 2025
Anna Graff, Erik J. Ringen, Taras Zakharko, Mark Stoneking, Kentaro K. Shimizu, Balthasar Bickel, Chiara Barbieri. An inverse correlation between linguistic and genetic diversity. 2024
Anna Graff, Damián E. Blasi, Erik J. Ringen, Vladimir Bajić, Daphné Bavelier, Kentaro K. Shimizu, Brigitte Pakendorf, Chiara Barbieri, Balthasar Bickel. Global patterns of genetic admixture reveal effects of language contact. 2024
Yasuyuki Nomura, Moeko Okada, Toshiaki Tameshige, Shotaro Takenaka, Kentaro K Shimizu, Shuhei Nasuda, Atsushi J Nagano. Modeling of transcriptomic variation among subgenomes in 25 accessions of common wheat reveals cis- and trans-regulation architectures. 2024
Yasuhiro Sato, Rie Shimizu-Inatsugi, Kazuya Takeda, Bernhard Schmid, Atsushi J Nagano, Kentaro K Shimizu. Reducing herbivory in mixed planting by genomic prediction of neighbor effects in the field. Nature communications. 2024. 15. 1. 8467-8467
Ingrid Olivares, Sergio Tusso, María José Sanín, Marylaure de La Harpe, Oriane Loiseau, Jonathan Rolland, Nicolas Salamin, Michael Kessler, Kentaro K. Shimizu, Margot Paris. Hyper-Cryptic radiation of a tropical montane plant lineage. Molecular Phylogenetics and Evolution. 2024
Athene Giesen, Wolf U. Blanckenhorn, Martin A. Schäfer, Kentaro K. Shimizu, Rie Shimizu-Inatsugi, Bernhard Misof, Lars Podsiadlowski, Oliver Niehuis, Heidi E. L. Lischer, Simon Aeschbacher, et al. Geographic Variation in Genomic Signals of Admixture Between Two Closely Related European Sepsid Fly Species. Evolutionary Biology. 2023
Chow-Lih Yew, Takashi Tsuchimatsu, Rie Shimizu Inatsugi, Shinsuke Yasuda, Masaomi Hatakeyama, Hiroyuki Kakui, Takuma Ohta, Keita Suwabe, Masao Watanabe, Seiji Takayama, et al. Dominance in self-compatibility between subgenomes of allopolyploid Arabidopsis kamchatica shown by transgenic restoration of self-incompatibility. Nature Communications. 2023. 14. 7618
Epifanía Arango-Isaza, María José Aninao, Roberto Campbell, Felipe I. Martínez, Kentaro K. Shimizu, Chiara Barbieri. Bridging the gap: returning genetic results to indigenous communities in Latin America. Frontiers in Genetics. 2023
Reinhold Stockenhuber, Reiko Akiyama, Nicolas Tissot, Stefan Milosavljevic, Misako Yamazaki, Michele Wyler, Adriana B Arongaus, Roman Podolec, Yasuhiro Sato, Alex Widmer, et al. UV RESISTANCE LOCUS 8-Mediated UV-B Response Is Required Alongside CRYPTOCHROME 1 for Plant Survival in Sunlight under Field Conditions. Plant And Cell Physiology. 2023
Reiko Akiyama, Takao Goto, Toshiaki Tameshige, Jiro Sugisaka, Ken Kuroki, Jianqiang Sun, Junichi Akita, Masaomi Hatakeyama, Hiroshi Kudoh, Tanaka Kenta, et al. Seasonal pigment fluctuation in diploid and polyploid Arabidopsis revealed by machine learning-based phenotyping method PlantServation. Nature Communications. 2023. 14. 1
Jianqiang Sun, Moeko Okada, Toshiaki Tameshige, Rie Shimizu-Inatsugi, Reiko Akiyama, Atsushi J Nagano, Jun Sese, Kentaro K Shimizu. A low-coverage 3' RNA-seq to detect homeolog expression in polyploid wheat. NAR genomics and bioinformatics. 2023. 5. 3. lqad067
Chongmeng Xu, Yasuhiro Sato, Misako Yamazaki, Marcel Brasser, Matthew A. Barbour, Jordi Bascompte, Kentaro K. Shimizu. Genome-wide association study of aphid abundance highlights a locus affecting plant growth and flowering in Arabidopsis thaliana. Royal Society Open Science. 2023. 10. 8
Epifanía Arango-Isaza, Marco Rosario Capodiferro, María José Aninao, Hiba Babiker, Simon Aeschbacher, Alessandro Achilli, Cosimo Posth, Roberto Campbell, Felipe I Martínez, Paul Heggarty, et al. The genetic history of the Southern Andes from present-day Mapuche ancestry. Current biology : CB. 2023. 33. 13. 2602-2615
Tomoki Sawa, Yoshitaka Moriwaki, Hanting Jiang, Kohji Murase, Seiji Takayama, Kentaro Shimizu, Tohru Terada. Comprehensive computational analysis of the SRK-SP11 molecular interaction underlying self-incompatibility in Brassicaceae using improved structure prediction for cysteine-rich proteins. bioRxiv. 2023
Yasuhiro Sato, Rie Shimizu-Inatsugi, Kazuya Takeda, Bernhard Schmid, Atsushi J. Nagano, Kentaro K. Shimizu. Genome-wide neighbor effects predict genotype pairs that reduce herbivory in mixed planting. 2023
Dario Copetti, Alberto Búrquez, Kentaro K. Shimizu, Rod A. Wing, Michael J. Sanderson, Martin F. Wojciechowski. An improved genome assembly of the saguaro cactus (Carnegiea gigantea(Engelm.) Britton & Rose). 2023
Yasuhiro Sato, Yuma Takahashi, Chongmeng Xu, Kentaro K Shimizu. Detecting frequency-dependent selection through the effects of genotype similarity on fitness components. Evolution; international journal of organic evolution. 2023. 77. 4. 1145-1157
Tomoaki Miura, Yuji Tokumoto, Nagai Shin, Kentaro K. Shimizu, Runi Anak Sylvester Pungga, Tomoaki Ichie. Utility of commercial high-resolution satellite imagery for monitoring general flowering in Sarawak, Borneo. Ecological Research. 2023
Takumi Tomoi, Toshiaki Tameshige, Eriko Betsuyaku, Saki Hamada, Joe Sakamoto, Naoyuki Uchida, Keiko U Torii, Kentaro K Shimizu, Yosuke Tamada, Hiroko Urawa, et al. Targeted single-cell gene induction by optimizing the dually regulated CRE/loxP system by a newly defined heat-shock promoter and the steroid hormone in Arabidopsis thaliana. Frontiers in plant science. 2023. 14. 1171531-1171531