Rchr
J-GLOBAL ID：200901005695595964   Update date: May. 04, 2024

Shimizu Kentaro

シミズ ケンタロウ | Shimizu Kentaro
Affiliation and department：
Japan Women's University Faculty of Science Department of Mathematics, Physics and Computer Science

About Japan Women's University Faculty of Science Department of Mathematics, Physics and Computer Science


Job title： Professor
Other affiliations (1)：
Homepage URL  (1)： http://www.bi.a.u-tokyo.ac.jp/~shimizu/
Research field  (2)： Biophysics ,  Information theory
Research keywords  (6)： 生体分子の構造予測・機能解析 ,  並列・分散コンピューティング ,  オペレーティングシステム ,  Structure Prediction and Function Analysis of Biomolecules ,  Parallel and Distributed Computing ,  Operating Systems
Research theme for competitive and other funds  (40)：
  • 2021 - 2024 Docking prediction and design of peptides by molecluar simulation and deep learning
  • 2021 - 2024 ゲノムジャンク領域にコードされる機能ペプチドの制御機構の情報学的推定と実験的検証
  • 2021 - 2024 非コード領域・タンパク構造情報を含むオミクス統合解析に基づく精密医療の実現
  • 2017 - 2020 Prediction and analysis of intrinsically disordered regions in membrane proteins
  • 2011 - 2015 Development of protein-carbohydrate binding prediction systems and databases
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Papers (125)：
  • Fan Zhao, Yoshitaka Moriwaki, Tomohiro Noguchi, Kentaro Shimizu, Tomohisa Kuzuyama, Tohru Terada. QM/MM Study of the Catalytic Mechanism and Substrate Specificity of the Aromatic Substrate C-Methyltransferase Fur6. Biochemistry. 2024
  • Tomoki Sawa, Yoshitaka Moriwaki, Hanting Jiang, Kohji Murase, Seiji Takayama, Kentaro Shimizu, Tohru Terada. Comprehensive computational analysis of the SRK-SP11 molecular interaction underlying self-incompatibility in Brassicaceae using improved structure prediction for cysteine-rich proteins. bioRxiv. 2023
  • Kano Hasegawa, Yoshitaka Moriwaki, Tohru Terada, Cao Wei, Kentaro Shimizu. Feedback-AVPGAN: Feedback-guided generative adversarial network for generating antiviral peptides. Journal of Bioinformatics and Computational Biology. 2022. 20. 06
  • Shohei Yamaguchi, Haruka Nakashima, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu. Prediction of protein mononucleotide binding sites using AlphaFold2 and machine learning. Computational Biology and Chemistry. 2022. 107744-107744
  • Xiaoyu Yang, Natsuko I Kobayashi, Yoshiki Hayashi, Koichi Ito, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu, Motoyuki Hattori, Ren Iwata, Hisashi Suzuki, et al. Mutagenesis Analysis of GMN Motif in Arabidopsis thaliana Mg2+ Transporter MRS2-1. Bioscience, Biotechnology, and Biochemistry. 2022
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MISC (217)：
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Books (15)：
  • 大人のための「情報」教科書(共著)
    数研出版 2003
  • 高校教科書「情報C」(共著)
    数研出版 2003
  • 高校教科書「情報B」(共著)
    数研出版 2003
  • 高校教科書「情報A」(共著)
    数研出版 2003
  • 分子動力学シミュレーションの並列計算
    化学フロンティア, 東京化学同人 2002
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Works (12)：
  • タンパク質の立体構造・機能予測手法の開発
    2000 -
  • Development of the Methods for Predicting Protein Structure and Functions
    2000 -
  • 大規模並列処理技術を用いたタンパク質の構造解析システムの開発
    1999 -
  • Development of a Software system for Analyzing Protein Structure and Functions
    1999 -
  • 資源管理機能を備えた並列プログラミング環境の開発
    1997 -
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Education (4)：
  • - 1985 The University of Tokyo
  • - 1985 The University of Tokyo Graduate School, Division of Science
  • - 1980 The University of Tokyo Faculty of Science
  • - 1980 The University of Tokyo Faculty of Science
Professional career (2)：
  • Master of Science (The University of Tokyo)
  • Doctor of Science (The University of Tokyo)
Work history (9)：
  • 2024/04 - 現在 The University of Tokyo Graduate School of Agricultural and Life Sciences
  • 2023/04 - 現在 Japan Women's University Faculty of Science Department of Mathematics, Physics and Computer Science
  • 1998/12 - 2023/03 The University of Tokyo Graduate School of Agricultural and Life Sciences
  • 1996 - 1998 The University of Tokyo Graduate School of Agricultural and Life Sciences
  • 1992 - 1996 電気通信大学情報工学科 助教授
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Association Membership(s) (9)：
日本バイオイフォマティックス学会 ,  ACS ,  日本生物物理学会 ,  日本農芸化学会 ,  ACM ,  日本ソフトウェア科学会 ,  電子情報通信学会 ,  情報処理学会 ,  IEEEコンピュータ学会(IEEE Computer Society)
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