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Rchr

J-GLOBAL ID：201301049355449068 Update date: Jan. 18, 2025

Kasukawa Takeya

Affiliation and department：
Other affiliations (2)：

Osaka University Institute for Protein Research
Yokohama City University Graduate School of Medical Life Science Visiting Professor

Research field (2)： Database science , Systems genomics

Research keywords (6)： Microarray , RNA-Seq , Transcriptome , Genome , Database , Bioinformatics

Research theme for competitive and other funds (3)：

2022 - 2025 A multi-omics study on multiple system atrophy patients with family history
2021 - 2024 転写ユニティー機構を構築する多因子間相互作用の時空間的かつ定量的解明
2021 - 2023 Development of data analysis platform technology for data-driven genomic breeding

Papers (101)：

Tomoe Nobusada, Chi Wai Yip, Saumya Agrawal, Jessica Severin, Imad Abugessaisa, Akira Hasegawa, Chung Chau Hon, Satoru Ide, Masaru Koido, Atsushi Kondo, et al. Update of the FANTOM web resource: enhancement for studying noncoding genomes. Nucleic acids research. 2024
Nejc Haberman, Holly Digby, Rupert Faraway, Rebecca Cheung, Anob M. Chakrabarti, Andrew M. Jobbins, Callum Parr, Kayoko Yasuzawa, Takeya Kasukawa, Chi Wai Yip, et al. Widespread 3′UTR capped RNAs derive from G-rich regions in proximity to AGO2 binding sites. BMC Biology. 2024. 22. 1
Chi Wai Yip, Callum Parr, Hazuki Takahashi, Kayoko Yasuzawa, Matthew Valentine, Hiromi Nishiyori-Sueki, Camilla Ugolini, Valeria Ranzani, Mitsuyoshi Murata, Masaki Kato, et al. CFC-seq: identification of full-length capped RNAs unveil enhancer-derived transcription. 2024
Saumya Agrawal, Andrey Buyan, Jessica Severin, Masaru Koido, Tanvir Alam, Imad Abugessaisa, Howard Y. Chang, Josée Dostie, Masayoshi Itoh, Juha Kere, et al. Annotation of nuclear lncRNAs based on chromatin interactions. PLOS ONE. 2024. 19. 5. e0295971-e0295971
Imad Abugessaisa, Ri-Ichiroh Manabe, Tsugumi Kawashima, Michihira Tagami, Chitose Takahashi, Yasushi Okazaki, Stefania Bandinelli, Takeya Kasukawa, Luigi Ferrucci. OVCH1 Antisense RNA 1 is differentially expressed between non-frail and frail old adults. GeroScience. 2024. 46. 2. 2063-2081

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MISC (24)：

粕川雄也, SCOTT Walker, 長谷川哲, NISHAD Thalhath, 高田豊行, 桝屋啓志, 川路英哉. 転写制御理解のためのゲノムワイドなシスエレメントデータベースfanta.bio. 日本生化学会大会(Web). 2023. 96th. [2S07e-04]
Abugessaisa I, Noguchi S, Carninci P, Kasukawa T. The FANTOM5 Computation Ecosystem: Genomic Information Hub for Promoters and Active Enhancers. Methods in molecular biology (Clifton, N.J.). 2017. 1611. 199-217
T. Kasukawa, M. Lizio, J. Harshbarger, S. Hisashi, J. Severin, A. Imad, S. Sahin, T. C. Freeman, K. Baillie, A. Sandelin, et al. FANTOM5 web resource for the large-scale genome-wide transcription start site activity profiles of wide-range of mammalian cells. HUMAN GENOMICS. 2016. 10
粕川雄也, 川路英哉, 川路英哉, 川路英哉. 生命科学データベース,プロジェクトの動向 4.FANTOM5-ヒト・マウスの広範な細胞を対象とした転写開始活性の網羅的・定量的プロファイル. 実験医学. 2014. 32. 20
粕川雄也, 杉本昌弘, 肥田昌子, 南陽一, 森雅代, 本間さと, 本間研一, 三島和夫, 曽我朋義, 上田泰己. 睡眠基礎研究の萌芽的シンポジウムヒト血液代謝産物を用いた2時点の血液サンプルによる体内時刻測定法. 日本睡眠学会定期学術集会プログラム・抄録集. 2013. 38回. 111-111

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Patents (2)：

Books (9)：

生命科学データ解析を支える情報技術
技術評論社 2019 ISBN:9784297103194
生物時計の生態学 : リズムを刻む生物の世界
文一総合出版 2015 ISBN:9784829962060
時間薬理学による最新の治療戦略
医薬ジャーナル社 2013 ISBN:4753226042
体内時計の科学と産業応用 (バイオテクノロジーシリーズ)
シーエムシー出版 2011 ISBN:4781303404
改訂第2版バイオデータベースとウェブツールの手とり足とり活用法 - 遺伝子の配列・機能解析、タンパク質解析、プロテオミクス、文献検索、検索エンジン...etc.真に役立つサイトを使い倒す!
羊土社 2007 ISBN:4758108110

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Lectures and oral presentations (1)：

Updating a data warehouse with low traffic cost
(IPSJ SIG Notes 1997)

Professional career (1)：

Ph.D (informatics) (Osaka University)

Work history (8)：

2022/04 - 現在 Yokohama City University Graduate School of Medical Life Science Visiting Professor
2019/10 - 現在 RIKEN RIKEN Center for Integrative Medical Sciences Team Leader
2018/10 - 現在 Osaka University Institute for Protein Research Visiting Professor
2018/04 - 2019/09 RIKEN RIKEN Center for Integrative Medical Sciences Unit Leader
2013/04 - 2018/03 RIKEN Center for Life Science Technology Unit Leader

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Association Membership(s) (4)：

THE INSTITUTE OF ELECTRONICS, INFORMATION AND COMMUNICATION ENGINEERS , INFORMATION PROCESSING SOCIETY OF JAPAN , JAPANESE SOCIETY FOR BIOINFORMATICS , THE MOLECULAR BIOLOGY SOCIETY OF JAPAN

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