Rsrc

J-GLOBAL ID：202010006781900000 Research Resource code：NBDC01723 Update date：Jul. 22, 2024

Bgee DataBase for Gene Expression Evolution: Bgee

Owning Organization：

BGEE administrators

Resource classification： Data,Database

Tag (subject) (2)： Genome/Gene , Organism

Tag (data type) (3)： Expression , Localization , Classification

Species (28)： Anolis carolinensis (NCBI Taxonomy ID: 28377) , Bos taurus (NCBI Taxonomy ID: 9913) , Branchiostoma lanceolatum (NCBI Taxonomy ID: 7740) , Caenorhabditis elegans (NCBI Taxonomy ID: 6239) , Canis lupus (NCBI Taxonomy ID: 9612) , Cavia porcellus (NCBI Taxonomy ID: 10141) , Danio rerio (NCBI Taxonomy ID: 7955) , Drosophila ananassae (NCBI Taxonomy ID: 7217) , Drosophila melanogaster (NCBI Taxonomy ID: 7227) , Drosophila mojavensis (NCBI Taxonomy ID: 7230) , Drosophila pseudoobscura (NCBI Taxonomy ID: 7237) , Drosophila simulans (NCBI Taxonomy ID: 7240) , Drosophila virilis (NCBI Taxonomy ID: 7244) , Drosophila yakuba (NCBI Taxonomy ID: 7245) , Equus caballus (NCBI Taxonomy ID: 9796) , Erinaceus europaeus (NCBI Taxonomy ID: 9365) , Eumetazoa (NCBI Taxonomy ID: 6072) , Felis catus (NCBI Taxonomy ID: 9685) , Gallus gallus (NCBI Taxonomy ID: 9031) , Gorilla gorilla gorilla (NCBI Taxonomy ID: 9595) , Homo sapiens (NCBI Taxonomy ID: 9606) , Lepisosteus oculatus (NCBI Taxonomy ID: 7918) , Macaca mulatta (NCBI Taxonomy ID: 9544) , Metazoa (NCBI Taxonomy ID: 33208) , Monodelphis domestica (NCBI Taxonomy ID: 13616) , Mus musculus (NCBI Taxonomy ID: 10090) , Ornithorhynchus anatinus (NCBI Taxonomy ID: 9258) , Oryctolagus cuniculus (NCBI Taxonomy ID: 9986)

Overview：

Bgee is a database for retrieval and comparison of gene expression patterns across multiple animal species. It provides an intuitive answer to the question where is a gene expressed? and supports research in cancer and agriculture as well as evolutionary biology.
Bgee data are produced from multiple data types (bulk and single-cell RNA-Seq, Affymetrix, in situ hybridization, EST data), and multiple data sets, that are all integrated consistently to provide a single answer to the question: where is this gene expressed?
Bgee is based exclusively on curated normal, healthy wild-type expression data (e.g., no gene knock-out, no treatment, no disease), to provide a comparable reference of normal gene expression.
Bgee produces calls of presence/absence of expression, and of differential over-/under-expression, integrated along with information of gene orthology, and of homology between organs. This allows comparisons of expression patterns between species.

Source： FAIRsharing

Record maintainer： See the corresponding part in the FAIRsharing record

Record license： Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license

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